Gene Information

Name : Rahaq2_0414 (Rahaq2_0414)
Accession : YP_005198492.1
Strain : Rahnella aquatilis CIP 78.65
Genome accession: NC_016818
Putative virulence/resistance : Virulence
Product : P pilus assembly protein, chaperone PapD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 424992 - 425729 bp
Length : 738 bp
Strand : +
Note : PFAM: Gram-negative pili assembly chaperone, C-terminal domain; Gram-negative pili assembly chaperone, N-terminal domain

DNA sequence : 
ATGAACATGCATTTATTACGGTTTTTGGCGGCATTACTGCTGATGACGGGCGCGGCTTATCCGGCTTGTGCCGCAGTCAA
CCTTGACCGGACGCGCATCATTTATAACGCCAGTGATAAATCCGTCAGCGTGATGCTGGAAAACCAGAGCAAAGATTTAC
CGTATCTGGCGCAGGTCTGGCTGGAGAACGCGAAGGGCGAAAAAATCACCTCTCCGCTGGTGGCGTTGCCGCCGATGCAG
CGCATTGATGCAGGTCAGAAAAGCCAGATCCGCATCCTGCAATTACCCGAAACCGCTGGTCTGCCGAAAGATCGCGAATC
GCTGTTTTATTTTAACGTGCGTGAAGTGCCACCAAAGAGTGACATGGCGAACGTGATGCAGGTGGCGATCCAAAGTCGGG
TGAAGCTATTTTTCCGTCCGGCGGAAATCAGGAGTCTGGTGAAAGGCAACTGGCAGGAGCAACTGCAGGTTATCCGTCTC
AGTGACGGATTGAAACTGACCAATCCGACGCCCTTTTACATCACCGTCGGTTATTTGGGTAAAGATAACAAAGGCAATAT
TCCTGGTTTTGACAGTGTGATGCTGGCTCCGTTTGCTACCGAAAACCTCAGCGGCAGACAGTATGTTAGCCAGCAATACA
GCCTGGGCTACATGGATGATTACGGCGGTTTGCAGGTGAACGAGTACCACTGTCAGACACAACAATGTCAGCGCATCAGC
AAAGATGCGAAACGCTAA

Protein sequence : 
MNMHLLRFLAALLLMTGAAYPACAAVNLDRTRIIYNASDKSVSVMLENQSKDLPYLAQVWLENAKGEKITSPLVALPPMQ
RIDAGQKSQIRILQLPETAGLPKDRESLFYFNVREVPPKSDMANVMQVAIQSRVKLFFRPAEIRSLVKGNWQEQLQVIRL
SDGLKLTNPTPFYITVGYLGKDNKGNIPGFDSVMLAPFATENLSGRQYVSQQYSLGYMDDYGGLQVNEYHCQTQQCQRIS
KDAKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 1e-51 47
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 1e-50 46
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 1e-50 46
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 2e-50 46
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 3e-50 45
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 3e-50 45
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 2e-50 45
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 4e-44 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq2_0414 YP_005198492.1 P pilus assembly protein, chaperone PapD VFG1547 Protein 6e-51 46
Rahaq2_0414 YP_005198492.1 P pilus assembly protein, chaperone PapD VFG0896 Protein 1e-50 45
Rahaq2_0414 YP_005198492.1 P pilus assembly protein, chaperone PapD VFG0885 Protein 2e-44 44