Name : Rahaq2_0413 (Rahaq2_0413) Accession : YP_005198491.1 Strain : Rahnella aquatilis CIP 78.65 Genome accession: NC_016818 Putative virulence/resistance : Virulence Product : P pilus assembly protein, porin PapC Function : - COG functional category : - COG ID : - EC number : - Position : 422443 - 424944 bp Length : 2502 bp Strand : + Note : PFAM: Fimbrial Usher protein DNA sequence : ATGTCGTTAGCGATGAATAGAACATCGGCTGAAATAAAAAATGCTCTATGGTTTATTTTCCTTCTGTCGGGATGCTTTAT TTCAGTCAGAAGCTTCGCAGTGGAATTTAACGTTAACTTCATTGATTCTGCCGATCGCAATAACGTCGATCTGTCACGAT TTCAGGTGGCCGATTATATCGCGCCCGGCGAATACCTGCTGGATGTGGTGCTCAATGGCCGTACGCTCGGCGAACAGAGC GTGATTCACTATATTCCCACTGCAGATAAAAAAAACAGCCGCCTGTGTTTACCGCCCGCACTGGTTGATAAATTCGATCT CACCAAAGACGCACGCGAAAAGCTGACTCTGTGGCATCACGGCGAATGCACGTCTCTCGATCAGCAGCAGGAAGTCACTG CACGTTACGATCAGGCAAAACAAACGCTGAACATCAGCATTCCGCAGGCCTGGCTAATCTTTCACGACCAAAACTGGGTG CCACCTTCGCAGTGGGACGATGGCGTCAACGGCGCATTGCTCGATTACAATCTGCTCGGCAGCAAATACATGCCGCAGTC CGGCGACAGCACCACCAGTTTCAGCAGTTATGGCACCACCGGTTTTAACGTCGGGGCGTGGCGCGCCCGTGCCGATTATC AGTATTCTTCGTCGCGCACATCGGGCATGCCAGCCAGTGACAAATTCACCTGGACGCAGACCTATTTGTACCGCGCGCTG CCTTCTGTTGGCGCACGTCTGACTGGCGGGCAGACTTATTTCAGCTCCGATATTTTCGATTCATTTCGCTTTCTCGGCGT CTCGCTGAACAGCGATCAGCGCATGTTGCCGCCGTCACTGCGCGGGTATGCGCCGCAGGTCACCGGCATCGCCAAAACTA ACGCTAAAGTGAGCATCAGTCAGAACGGACGGGTGATTTATCAGACCAATGTGTCACCGGGTCCCTTTGTGGTTCAGGAT CTGACCGAAGCGGTACAGGGTGCGCTGGACGTCAAAATCGAAGAAGAAAATGGCAGCGTGACGACTTATCAGGTGACCAC CGCAACCATTCCGTTTCTGACCCGAAAAGGCCAGGTACGTTTCAAAACCGCCATGGGTAAACCGACCACCGGTAGCAGCA ATCACGTCTTGCAGCCGGGTTTTTACAGCGGGGAAATGTCCTGGGGGGCGCTGAATGATTTCTCGCTTTACGGCGGTCTG ATCACCACCACCGGTAACTATCAGGCGCAGGCCATCGGCGTCGGGCAAAACCTGCAAAAACTCGGTGCCGTATCTTTTGA TGTCACGCGCTCCTCGGCGACCGTGCCGGTGGCAGGGAAACAAACCGGACTGAGTTACCGCGCCAACTATTCCAAGCGGT TTGACTCGACCGGCAGTCAGATTACGTTTGCCGGATACCGCTTCTCGGAAAAAACGTTTATGTCGTTCAGCCAGTATCTC GACAAGGTGAATGGTGACGGCTATTCCCGCGATGATAAACAAACTTACACCGTGACAGCCAATCAGTATCTGCCATGGCC CGCAATTACGCTTTATCTCTCGGCGACGCACAAGGTCTACTGGAATGAGAGTGCGAGTAATAATTACAGCGTATCGGTCA GCAAGATTTTTGATATCGGCCGCTTTACCGGCATCTCAGCCACCTTTTCCGCCAGCAAGCTGAATTACCGTGATACCGAT GAGAACCAGATGTTTCTGTCGCTCAGTTTGCCCCTGTCGTCAGGGCAGCAAATCAGTTACGACGCCCAGCAGGATTCGCA AAGTGGTTTCTCGCAAACGGCGTCGTATTACAACAGCCAGGATCCGAACAATAGCTGGCGTGTGGGTGCGGGCGGGAGCA GCCCGGATCTGCAAAAAGGCAACGGCGTGTTCCGCGCCAACTACCAGCACATGTCGCCGTACGGTCAGCTTGGCGCGAAC GGCAGCGTGAAAAATAACGATTACCGCTCGGTGAACGCCAACTGGTACGGCTCGTTTACCGCAACGGCGGCGGGTGCAGC ATTGCATCAGAGCAGCGCCGGCAGCGAGCCACGCATGATGGTATCAACCGGCGTGAAAGGCATTCCGATCAGCGATGGCG CGTCAGTGACCAATGATTACGGCATTGCCGTGGTGAACGGCGTATCCAGCTACCAGACCTCCGATATCCGCGTTGATGTG AATAATTTGCCGGACGACGTGGAAGTTTACAGCTCGGTGGTCAGCAAAACCCTGACGGAAGGTGCAATAGGCTTTCGCAA AATCCGCGCCATTAAGGGCGAACGCCTGATGGCGGTAATACGTCTCGCCGATGGCAGCCACCCGCCGCTGGGCGCTGCCG TTACGGACAACAGTTCCGGGTTTGAGGCGGGCCTGATTGGCGACGGTGGTCTGGCGTATCTGGCCGGAGTCTCCGGTGAG AAATCCCTTACCGTCCGCTGGGGAGACGGACAGCAATGTCAGATCCAGGTGCCACCGCAGCCCGTGACATATTCAGGGCA GGTATTGCTGCCTTGCACCTAA Protein sequence : MSLAMNRTSAEIKNALWFIFLLSGCFISVRSFAVEFNVNFIDSADRNNVDLSRFQVADYIAPGEYLLDVVLNGRTLGEQS VIHYIPTADKKNSRLCLPPALVDKFDLTKDAREKLTLWHHGECTSLDQQQEVTARYDQAKQTLNISIPQAWLIFHDQNWV PPSQWDDGVNGALLDYNLLGSKYMPQSGDSTTSFSSYGTTGFNVGAWRARADYQYSSSRTSGMPASDKFTWTQTYLYRAL PSVGARLTGGQTYFSSDIFDSFRFLGVSLNSDQRMLPPSLRGYAPQVTGIAKTNAKVSISQNGRVIYQTNVSPGPFVVQD LTEAVQGALDVKIEEENGSVTTYQVTTATIPFLTRKGQVRFKTAMGKPTTGSSNHVLQPGFYSGEMSWGALNDFSLYGGL ITTTGNYQAQAIGVGQNLQKLGAVSFDVTRSSATVPVAGKQTGLSYRANYSKRFDSTGSQITFAGYRFSEKTFMSFSQYL DKVNGDGYSRDDKQTYTVTANQYLPWPAITLYLSATHKVYWNESASNNYSVSVSKIFDIGRFTGISATFSASKLNYRDTD ENQMFLSLSLPLSSGQQISYDAQQDSQSGFSQTASYYNSQDPNNSWRVGAGGSSPDLQKGNGVFRANYQHMSPYGQLGAN GSVKNNDYRSVNANWYGSFTATAAGAALHQSSAGSEPRMMVSTGVKGIPISDGASVTNDYGIAVVNGVSSYQTSDIRVDV NNLPDDVEVYSSVVSKTLTEGAIGFRKIRAIKGERLMAVIRLADGSHPPLGAAVTDNSSGFEAGLIGDGGLAYLAGVSGE KSLTVRWGDGQQCQIQVPPQPVTYSGQVLLPCT |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 6e-130 | 42 |
papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 2e-129 | 42 |
papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-129 | 42 |
papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 8e-130 | 42 |
pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 1e-134 | 42 |
papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 8e-129 | 41 |
papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 1e-128 | 41 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
Rahaq2_0413 | YP_005198491.1 | P pilus assembly protein, porin PapC | VFG1548 | Protein | 3e-130 | 42 |
Rahaq2_0413 | YP_005198491.1 | P pilus assembly protein, porin PapC | VFG0884 | Protein | 8e-130 | 42 |
Rahaq2_0413 | YP_005198491.1 | P pilus assembly protein, porin PapC | VFG0895 | Protein | 7e-130 | 42 |