Gene Information

Name : Rahaq2_0413 (Rahaq2_0413)
Accession : YP_005198491.1
Strain : Rahnella aquatilis CIP 78.65
Genome accession: NC_016818
Putative virulence/resistance : Virulence
Product : P pilus assembly protein, porin PapC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 422443 - 424944 bp
Length : 2502 bp
Strand : +
Note : PFAM: Fimbrial Usher protein

DNA sequence :
ATGTCGTTAGCGATGAATAGAACATCGGCTGAAATAAAAAATGCTCTATGGTTTATTTTCCTTCTGTCGGGATGCTTTAT
TTCAGTCAGAAGCTTCGCAGTGGAATTTAACGTTAACTTCATTGATTCTGCCGATCGCAATAACGTCGATCTGTCACGAT
TTCAGGTGGCCGATTATATCGCGCCCGGCGAATACCTGCTGGATGTGGTGCTCAATGGCCGTACGCTCGGCGAACAGAGC
GTGATTCACTATATTCCCACTGCAGATAAAAAAAACAGCCGCCTGTGTTTACCGCCCGCACTGGTTGATAAATTCGATCT
CACCAAAGACGCACGCGAAAAGCTGACTCTGTGGCATCACGGCGAATGCACGTCTCTCGATCAGCAGCAGGAAGTCACTG
CACGTTACGATCAGGCAAAACAAACGCTGAACATCAGCATTCCGCAGGCCTGGCTAATCTTTCACGACCAAAACTGGGTG
CCACCTTCGCAGTGGGACGATGGCGTCAACGGCGCATTGCTCGATTACAATCTGCTCGGCAGCAAATACATGCCGCAGTC
CGGCGACAGCACCACCAGTTTCAGCAGTTATGGCACCACCGGTTTTAACGTCGGGGCGTGGCGCGCCCGTGCCGATTATC
AGTATTCTTCGTCGCGCACATCGGGCATGCCAGCCAGTGACAAATTCACCTGGACGCAGACCTATTTGTACCGCGCGCTG
CCTTCTGTTGGCGCACGTCTGACTGGCGGGCAGACTTATTTCAGCTCCGATATTTTCGATTCATTTCGCTTTCTCGGCGT
CTCGCTGAACAGCGATCAGCGCATGTTGCCGCCGTCACTGCGCGGGTATGCGCCGCAGGTCACCGGCATCGCCAAAACTA
ACGCTAAAGTGAGCATCAGTCAGAACGGACGGGTGATTTATCAGACCAATGTGTCACCGGGTCCCTTTGTGGTTCAGGAT
CTGACCGAAGCGGTACAGGGTGCGCTGGACGTCAAAATCGAAGAAGAAAATGGCAGCGTGACGACTTATCAGGTGACCAC
CGCAACCATTCCGTTTCTGACCCGAAAAGGCCAGGTACGTTTCAAAACCGCCATGGGTAAACCGACCACCGGTAGCAGCA
ATCACGTCTTGCAGCCGGGTTTTTACAGCGGGGAAATGTCCTGGGGGGCGCTGAATGATTTCTCGCTTTACGGCGGTCTG
ATCACCACCACCGGTAACTATCAGGCGCAGGCCATCGGCGTCGGGCAAAACCTGCAAAAACTCGGTGCCGTATCTTTTGA
TGTCACGCGCTCCTCGGCGACCGTGCCGGTGGCAGGGAAACAAACCGGACTGAGTTACCGCGCCAACTATTCCAAGCGGT
TTGACTCGACCGGCAGTCAGATTACGTTTGCCGGATACCGCTTCTCGGAAAAAACGTTTATGTCGTTCAGCCAGTATCTC
GACAAGGTGAATGGTGACGGCTATTCCCGCGATGATAAACAAACTTACACCGTGACAGCCAATCAGTATCTGCCATGGCC
CGCAATTACGCTTTATCTCTCGGCGACGCACAAGGTCTACTGGAATGAGAGTGCGAGTAATAATTACAGCGTATCGGTCA
GCAAGATTTTTGATATCGGCCGCTTTACCGGCATCTCAGCCACCTTTTCCGCCAGCAAGCTGAATTACCGTGATACCGAT
GAGAACCAGATGTTTCTGTCGCTCAGTTTGCCCCTGTCGTCAGGGCAGCAAATCAGTTACGACGCCCAGCAGGATTCGCA
AAGTGGTTTCTCGCAAACGGCGTCGTATTACAACAGCCAGGATCCGAACAATAGCTGGCGTGTGGGTGCGGGCGGGAGCA
GCCCGGATCTGCAAAAAGGCAACGGCGTGTTCCGCGCCAACTACCAGCACATGTCGCCGTACGGTCAGCTTGGCGCGAAC
GGCAGCGTGAAAAATAACGATTACCGCTCGGTGAACGCCAACTGGTACGGCTCGTTTACCGCAACGGCGGCGGGTGCAGC
ATTGCATCAGAGCAGCGCCGGCAGCGAGCCACGCATGATGGTATCAACCGGCGTGAAAGGCATTCCGATCAGCGATGGCG
CGTCAGTGACCAATGATTACGGCATTGCCGTGGTGAACGGCGTATCCAGCTACCAGACCTCCGATATCCGCGTTGATGTG
AATAATTTGCCGGACGACGTGGAAGTTTACAGCTCGGTGGTCAGCAAAACCCTGACGGAAGGTGCAATAGGCTTTCGCAA
AATCCGCGCCATTAAGGGCGAACGCCTGATGGCGGTAATACGTCTCGCCGATGGCAGCCACCCGCCGCTGGGCGCTGCCG
TTACGGACAACAGTTCCGGGTTTGAGGCGGGCCTGATTGGCGACGGTGGTCTGGCGTATCTGGCCGGAGTCTCCGGTGAG
AAATCCCTTACCGTCCGCTGGGGAGACGGACAGCAATGTCAGATCCAGGTGCCACCGCAGCCCGTGACATATTCAGGGCA
GGTATTGCTGCCTTGCACCTAA

Protein sequence :
MSLAMNRTSAEIKNALWFIFLLSGCFISVRSFAVEFNVNFIDSADRNNVDLSRFQVADYIAPGEYLLDVVLNGRTLGEQS
VIHYIPTADKKNSRLCLPPALVDKFDLTKDAREKLTLWHHGECTSLDQQQEVTARYDQAKQTLNISIPQAWLIFHDQNWV
PPSQWDDGVNGALLDYNLLGSKYMPQSGDSTTSFSSYGTTGFNVGAWRARADYQYSSSRTSGMPASDKFTWTQTYLYRAL
PSVGARLTGGQTYFSSDIFDSFRFLGVSLNSDQRMLPPSLRGYAPQVTGIAKTNAKVSISQNGRVIYQTNVSPGPFVVQD
LTEAVQGALDVKIEEENGSVTTYQVTTATIPFLTRKGQVRFKTAMGKPTTGSSNHVLQPGFYSGEMSWGALNDFSLYGGL
ITTTGNYQAQAIGVGQNLQKLGAVSFDVTRSSATVPVAGKQTGLSYRANYSKRFDSTGSQITFAGYRFSEKTFMSFSQYL
DKVNGDGYSRDDKQTYTVTANQYLPWPAITLYLSATHKVYWNESASNNYSVSVSKIFDIGRFTGISATFSASKLNYRDTD
ENQMFLSLSLPLSSGQQISYDAQQDSQSGFSQTASYYNSQDPNNSWRVGAGGSSPDLQKGNGVFRANYQHMSPYGQLGAN
GSVKNNDYRSVNANWYGSFTATAAGAALHQSSAGSEPRMMVSTGVKGIPISDGASVTNDYGIAVVNGVSSYQTSDIRVDV
NNLPDDVEVYSSVVSKTLTEGAIGFRKIRAIKGERLMAVIRLADGSHPPLGAAVTDNSSGFEAGLIGDGGLAYLAGVSGE
KSLTVRWGDGQQCQIQVPPQPVTYSGQVLLPCT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 6e-130 42
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 2e-129 42
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 2e-129 42
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 8e-130 42
pixC CAE85159.1 PixC protein Not tested PAI V 536 Protein 1e-134 42
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 8e-129 41
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 1e-128 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq2_0413 YP_005198491.1 P pilus assembly protein, porin PapC VFG1548 Protein 3e-130 42
Rahaq2_0413 YP_005198491.1 P pilus assembly protein, porin PapC VFG0884 Protein 8e-130 42
Rahaq2_0413 YP_005198491.1 P pilus assembly protein, porin PapC VFG0895 Protein 7e-130 42