Gene Information

Name : Rahaq2_3810 (Rahaq2_3810)
Accession : YP_005201732.1
Strain : Rahnella aquatilis CIP 78.65
Genome accession: NC_016818
Putative virulence/resistance : Virulence
Product : type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4042706 - 4044202 bp
Length : 1497 bp
Strand : +
Note : PFAM: Type II/IV secretion system protein

DNA sequence : 
ATGAGCGATATCCCCCTGCGCCCAGAGTCTCCATCCATTAACGACCGCCTGCAAAGTGAAGCGTCACTTGAAGCATTGTG
TCAGCGCTACAAAGCCGTTGTGTTGCATCGTGACAACCAGACGCTTCATGTTGCATGCCATGAAACAGAGGCAGACACGG
AGGCATTAAGTAATGTACTGCGCTTTGCCACGGGCTTAAAAGTGCAGCTTGAACGCTGGCCACAAACACGGCTCGAACAA
GTCATGGAGCAAGGCAATTCCGAAATAAAGGAGAAAACGGCCTCAGACGATTCATGGTCATCCTCGAAAACTGATGAAAG
CAATGAGCTGAATAATCAAAGCGATGCCCCGGTCATTAATGTCCTCAATCAGATACTGAGGCTGGCAATCACCCGCAGGG
CTTCAGATATACACTTTGAACCCTACGAACACAGTTTTCGGGTTCGGATGAGAATTGACGGAGTATTGCAGGAAGTCCCC
GGCCCTGAATTTTCGATGGCAGCGGGTGTGTGCGCACGACTAAAGATTATGGGGCAGCTGAATGTCGCTGAGCGCCGGTT
ACCACAAGATGGTCAGATCTCAGTCATGCTGCAAAATCAAAGATATTCCATGAGAGTATCTTCTCTGCCGACCTTACACG
GTGAGAAGATCGTGCTGCGCATTCTGCACATGACTCAGCAGGATCTCTCTATGTCACAACTTGGTTTTACGCCACGAGAC
CTGGACTTTTTCAAAGCCGCACTGAAACATCCACAAGGGCTAATTCTGGTCACCGGCCCGACAGGCAGCGGGAAAACGGT
AACGCTTTACAGCGGCCTTCGTCACCTGAATGCCATCTCCCGCAATATTTGCAGCGTGGAAGATCCCATTGAGATCCCGG
TCAGTGGCATAAATCAGACTCAGATTAACAGCAAAACAGATCTCAGCTTCGCCAGCGTCCTGCGTGCGTTGTTACGTCAG
GATCCTGATGTAATTATGGTTGGCGAAATCAGAGACAAAGAAACGGCCGAAATTGCCGTAAAGGCAGCACAAACCGGGCA
TCTGGTGCTTTCGACTCTTCACACGAATTCAACCTGCGAAACACTGATCCGCCTCCGACAAATGGGGATTGAAGGTTTCC
ATATTGCCGCCAGTTTACGTCTTGTGATTGCTCAGCGGCTGGTACGAAAATTGTGCCCCCATTGCCGCAAACCGCACAAG
TCGCTGGTTGAAAAAGACGCTGATGGCAGAAGCGGCTATATGCAGTTATGGCTATCCGCTGGATGCCATCAATGCTTTTC
GGGCTATTACGGGCGTACCGGTATTTATGAAACGCTGAACATAACACCCCGGTTACAGCAGGCGCTGGTAGCAGAGGCAA
GTGTGAACGAGCTGAGTAAAATTGCCCGCGAACAAGGTCAAAAGACGTTGCAGGAAGCCGGTATGTTGCTGGTCGAACAA
GGTATTACCTCACTTGAAGAACTTTATCGTGTTACCGGTGAAGGCGAGGCTACATGA

Protein sequence : 
MSDIPLRPESPSINDRLQSEASLEALCQRYKAVVLHRDNQTLHVACHETEADTEALSNVLRFATGLKVQLERWPQTRLEQ
VMEQGNSEIKEKTASDDSWSSSKTDESNELNNQSDAPVINVLNQILRLAITRRASDIHFEPYEHSFRVRMRIDGVLQEVP
GPEFSMAAGVCARLKIMGQLNVAERRLPQDGQISVMLQNQRYSMRVSSLPTLHGEKIVLRILHMTQQDLSMSQLGFTPRD
LDFFKAALKHPQGLILVTGPTGSGKTVTLYSGLRHLNAISRNICSVEDPIEIPVSGINQTQINSKTDLSFASVLRALLRQ
DPDVIMVGEIRDKETAEIAVKAAQTGHLVLSTLHTNSTCETLIRLRQMGIEGFHIAASLRLVIAQRLVRKLCPHCRKPHK
SLVEKDADGRSGYMQLWLSAGCHQCFSGYYGRTGIYETLNITPRLQQALVAEASVNELSKIAREQGQKTLQEAGMLLVEQ
GITSLEELYRVTGEGEAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 1e-73 44
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 1e-73 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq2_3810 YP_005201732.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG2426 Protein 1e-81 49
Rahaq2_3810 YP_005201732.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG0182 Protein 7e-79 47
Rahaq2_3810 YP_005201732.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG1876 Protein 4e-79 47
Rahaq2_3810 YP_005201732.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG1880 Protein 2e-91 45
Rahaq2_3810 YP_005201732.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG2048 Protein 6e-76 45
Rahaq2_3810 YP_005201732.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG0233 Protein 3e-77 45
Rahaq2_3810 YP_005201732.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG0112 Protein 2e-96 44