Gene Information

Name : Rahaq2_3565 (Rahaq2_3565)
Accession : YP_005201502.1
Strain : Rahnella aquatilis CIP 78.65
Genome accession: NC_016818
Putative virulence/resistance : Virulence
Product : ribokinase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3774660 - 3775592 bp
Length : 933 bp
Strand : -
Note : PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase

DNA sequence :
ATGAACAAAGGCAAGGTATGCGTATTTGGGTCTTTCAACCTCGATATCGTCGCAGGCATGGCGCGTTTCCCCAAACCGGG
AGAATCCCTGATTGCCCGCAACAGTATGATGGGCGCGGGCGGCAAGGGCGCCAACCAGGCGGTCGCCGCACTGCGTGCCG
GTGCGCGGGTGCATTATATCGGTAAAGTGGGTCGCGATGATTTCGGCATGTTCGCCCGGCGCCATCTCGACGGCGCCGGT
TTCGACGCCGTCACGCTGTTTTCCACCAGCGAATGCCCGACCGGCAACGCGCTGATTTATGTCGCCGGAGCCGATGCCGA
AAACATGATTGCCGTTGATCCGGGCGCCAACCTGACGGTCACCGATGAAGAAGTCGAACAGTGCCGTCCGGCCGTCGCCG
CCGCTGATATCCTGCTGACGCAACTCGAAAACAATCTGCCTGCGATTGAAAAACTGATCGGCATCGCGAAGGACAACGAC
ACCTACATTATCCTCAACCCGGCGCCGTTTCAGCCGGTTTCTGACCATTTACTGGCTCAGGTGGATTTACTCACGCCGAA
CGCCACAGAATGCACGCTGCTGACCGGCATTGAAGTCTGCGATATTCCCTCTGCCCAACGCGCCGCCCACGCGCTGCACG
CCAAAGGGATCCAGGCGCTGATCATCACGCTGGGCACGCAGGGCGCATTGCTTTCAGTGAACGGCGAAACGCAGATTATC
CACGCCTGTCCGGCGACCCCGGTCGACACCACCGGCGCAGGTGACGCCTTCAACGGCGCGCTGGCCTCCCAACTCGCCGC
CGGTGCGACACTCCCCGAAGCCGCACAATTCGCCTCCGCTTACGCGTCTGTTTGTGTGGAAAGGGCAGGCGCGGCGGCAT
CAATGCCGACATATGAAGAAGCGCGGGAGAGGATGGTGATGACGATGGTTTGA

Protein sequence :
MNKGKVCVFGSFNLDIVAGMARFPKPGESLIARNSMMGAGGKGANQAVAALRAGARVHYIGKVGRDDFGMFARRHLDGAG
FDAVTLFSTSECPTGNALIYVAGADAENMIAVDPGANLTVTDEEVEQCRPAVAAADILLTQLENNLPAIEKLIGIAKDND
TYIILNPAPFQPVSDHLLAQVDLLTPNATECTLLTGIEVCDIPSAQRAAHALHAKGIQALIITLGTQGALLSVNGETQII
HACPATPVDTTGAGDAFNGALASQLAAGATLPEAAQFASAYASVCVERAGAAASMPTYEEARERMVMTMV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf408 NP_460347.1 regulatory protein Not tested SPI-2 Protein 6e-51 45
rbsk YP_216390.1 DeoR family transcriptional regulator Not tested SPI-2 Protein 2e-51 45
ORF 408 CAB37417.1 - Not tested SPI-2 Protein 5e-51 45
APECO1_1076 YP_853096.1 carbohydrate kinase Not tested PAI IV APEC-O1 Protein 3e-48 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq2_3565 YP_005201502.1 ribokinase VFG0483 Protein 3e-51 45