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Name : Rahaq2_0355 (Rahaq2_0355) Accession : YP_005198441.1 Strain : Rahnella aquatilis CIP 78.65 Genome accession: NC_016818 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : - COG ID : - EC number : - Position : 381716 - 383701 bp Length : 1986 bp Strand : - Note : PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D; type IV pilus secretin (or competence protein) PilQ DNA sequence : ATGAAGAAGTTCATTAACCCTCTCTTAGTAAAGGCATGCATATTATGTGCTACCCTCCCGTGGATTGTACACGCGGAAGA ATTTACTGCGAGCTTCAAGGGCACGGATATTAAAGAGTTTATTGATACGATAAGTAAGAATCTGAATAAGACTATCCTTA TCGATCCCTCCGTGCAGGGGACTATTTCTGTCAGAAGTTATGATGTTTTGAATGAAGAACAATACTATCAATTTTTTCTA AGTGTGCTGGATGTCTATGGTTTTGCGGTGATCCCCATGGATAACGGGCTACTGAAGGTCGTGCGTTCAGCGAATGCCAA AATGTCTGGTGTACCCGTTGCGGACAAAAACAGACCCGGTAAGGGAGATGAAATTGTCACCCGCGTCGTTACGCTTCTTA ATGTACCGGTCAGAGAATTGGCACCTTTGCTTCGCCAGATGAATGACAGTACAGGAGTAGGCAGTGTTGTTCATTATGAA CCCTCCAATGTTTTGCTGCTGACTGGCCGGGCATCAGTGGTCAACCGGCTTATTAATCTGGTCGAACGCGTTGACTCGAT GGGTGACCAGCAAAGGCAAACCATCAAACTAAAATATGCTTCTGCCCCCGAAATGGCTGAGATGATGAACAACCTGATCC GTGAAGAATCCAAAGGACAATCATCATCTATATTACAAGCCAAAATTGTCGCCGATGAAAGGACCAATACGCTCATTGTC AGCGGGCCAGAAAACGTGCGAAGTCGCGCAGCAAAACTGGTTAATCAGTTGGATAAAGATCAGTCTTCTCAGGGCAACAC CCGTGTTTTCTACCTGAAATATGCCAAGGCTGAAAAAATTGTTCCCGTTCTGACAGGCATTACGCAGGAGATGAAAGAAG GCAAAACTGCCCAGCCTTCGACCGCCTCTAACAATCCGATGAGCATAACGGCTGATGAGCAAACCAACTCCATCGTCATT ACTGCTCAGCAGGATGTGATGCAATCACTTGAACAGGTTATCACCAAGCTCGATATCCGCCGCGCACAGGTTTTAGTCGA AGCCATTATTGTTGAAGTACAGGATGGCAACGGGCTCAATTTGGGTATCCAGTGGAGCAACAACCAGGTTGGCGGAACAC AATTTACCGGTACCGGCGCGCCACTATCGACCGTTGCGGCCGGAGTACGCCAGTACAAAAAAGAGGGTGTTATCAGCAGT GATAACCCCCTAAGCAGCACTTTGCAGACCTTCAATGGCATGACCGCAGGCTTCTTTAGCGGTGACTGGAACGTCTTACT CACTGCGTTATCTACCAGTAATAAAAACGATATTCTTGCCACGCCAAGCATTGTTACTCTCGATAATAAAGAAGCCTCAT TCAATGTCGGTCAGGAAGTTCCCTCCCTGTCTGGTTCACAAACCACGTCTGGCGACAACATTTATAGTAGCGTGGTTTAC AAAACCGTCGGCACAAAATTGAAGGTCACTCCGCAGATCAATGAAGGGGACTCTGTGCTGATGGAAATCGAACAGGAAGT TTCCAGCGTTGATACTTCAACCAATTCTAGTCTTGGCCCCACCTTCAATACCCGAACCATTTCCAATGCCGTCCTGGTTC GTACGGGTGAAACTGTAGTCCTGGGCGGTTTGCTGGATGACAGCACCAAAGAAACCAAATCCAAAGTTCCTCTGTTGGGT GATATTCCGTGGATAGGTAATTTGTTCCGCTATACCAGCACTGAATCAGCAAAACGTAATCTGATGGTGTTTATCAGGCC GACCATTATTCGCGATGATGAGGTTTACTCCTCTATTTCCAATAAGAAATACTCGCATTTCCAAAAACTCCAAAAAACAC GTCAGGATGAAGATCATCAAGATCTGCTCACGCCAAATACTCGTGCTGTTTTGCCCGACTACCCTGCCCCTGAAAACAGT TCGCCAAAAACCTCTCTGTCGACCATGCCTGATAACGACAAACCTCGTAATCCGTTTAGTGGATAA Protein sequence : MKKFINPLLVKACILCATLPWIVHAEEFTASFKGTDIKEFIDTISKNLNKTILIDPSVQGTISVRSYDVLNEEQYYQFFL SVLDVYGFAVIPMDNGLLKVVRSANAKMSGVPVADKNRPGKGDEIVTRVVTLLNVPVRELAPLLRQMNDSTGVGSVVHYE PSNVLLLTGRASVVNRLINLVERVDSMGDQQRQTIKLKYASAPEMAEMMNNLIREESKGQSSSILQAKIVADERTNTLIV SGPENVRSRAAKLVNQLDKDQSSQGNTRVFYLKYAKAEKIVPVLTGITQEMKEGKTAQPSTASNNPMSITADEQTNSIVI TAQQDVMQSLEQVITKLDIRRAQVLVEAIIVEVQDGNGLNLGIQWSNNQVGGTQFTGTGAPLSTVAAGVRQYKKEGVISS DNPLSSTLQTFNGMTAGFFSGDWNVLLTALSTSNKNDILATPSIVTLDNKEASFNVGQEVPSLSGSQTTSGDNIYSSVVY KTVGTKLKVTPQINEGDSVLMEIEQEVSSVDTSTNSSLGPTFNTRTISNAVLVRTGETVVLGGLLDDSTKETKSKVPLLG DIPWIGNLFRYTSTESAKRNLMVFIRPTIIRDDEVYSSISNKKYSHFQKLQKTRQDEDHQDLLTPNTRAVLPDYPAPENS SPKTSLSTMPDNDKPRNPFSG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-128 | 46 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 1e-136 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rahaq2_0355 | YP_005198441.1 | general secretion pathway protein D | VFG2047 | Protein | 5e-127 | 46 |
