Gene Information

Name : Rahaq2_3456 (Rahaq2_3456)
Accession : YP_005201395.1
Strain : Rahnella aquatilis CIP 78.65
Genome accession: NC_016818
Putative virulence/resistance : Unknown
Product : riboflavin biosynthesis protein RibD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3667258 - 3668406 bp
Length : 1149 bp
Strand : -
Note : PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD

DNA sequence :
ATGTCGCCTGAACAACCTGCAGAACAACAACTCGCCGAAAATCATGCTGATGAACGCTACATGGCGCGGGCTTTCGAGCT
TGCTCGACGCGGCCGTTTCACGACCACACCTAATCCCAACGTCGGTTGTGTCATTGTTTTAAATGGCGAAATCGTCGGTG
AGGGTTATCATTTGCGTGCCGGCGAACCCCATGCCGAAGTCCACGCATTACGTATGGCCGGTGAGAAAGCGAAAGGGGCC
ACAGCCTATGTGACGCTGGAGCCATGCAGTCATCATGGTCGGACGCCGCCATGTGCTGATGCCTTACTGGCGGCAGGTAT
CGCCCGCGTCGTTGCCGCGATGCAGGATCCTAACCCGGAGGTCGCGGGGCGTGGTTTATACCGCCTGAAACAAAACGGAG
TGGATGTCAGCCACGGGCTGATGCATCCGCAGGCTGAAGCGGTGAACCTCGGTTTCCTGAAACGTATGCGTACCGGTTTT
CCTTATGTTCAGCTCAAAATGGGCGCGTCTATAGATGGCAGGACCGCGATGGCCTCGGGCGAAAGCCAGTGGATAACGTC
AGCGGCTGCCCGCGCTGACGTTCAGCGTTTTCGTGCTGAAAGCTCGGCTATTCTGAGCACCAGTGCGACGGTTCTCGCGG
ACAATCCTTCGCTTAATGTACGCTGGAGCGAACTGGGCAGTGACGTGCAGGCGATTTATCCCGAGAAAAATCTGCGTCAG
CCGCTGCGGATTATTCTCGACAGCCAGAACCGCGTAACGCCACAGCATCAGCTGATGAACTTACCTGGTGAAGTATGGCT
CGCACGGCTGGAAACTGACACACAAGTCTGGCCGGAGTCCGTCGAACAATGGCGCGTGGCGGGGCGCGATAACCGCATTG
ATCTGGTTCTGCTGATGATGCAACTGGCGAAACGTCAGATAAATTGCATCTGGGTGGAGGCAGGCGCGCAACTGGCCGGT
GCCTTATTACAAGCCGGTCTGGTTGATGAATTAATCGTTTATATGGCCCCTAAGTTATTGGGCGATAATGGTCGCGCACT
GTGTGAACTGCCAGGATTGCAACATCTGGCGGATGCGCCTGAATTCATTTTCAGTGATATCCGCCAGGTTGGCCCTGACT
TACGTTTGCGCCTGAAACCGGTGTATTGA

Protein sequence :
MSPEQPAEQQLAENHADERYMARAFELARRGRFTTTPNPNVGCVIVLNGEIVGEGYHLRAGEPHAEVHALRMAGEKAKGA
TAYVTLEPCSHHGRTPPCADALLAAGIARVVAAMQDPNPEVAGRGLYRLKQNGVDVSHGLMHPQAEAVNLGFLKRMRTGF
PYVQLKMGASIDGRTAMASGESQWITSAAARADVQRFRAESSAILSTSATVLADNPSLNVRWSELGSDVQAIYPEKNLRQ
PLRIILDSQNRVTPQHQLMNLPGEVWLARLETDTQVWPESVEQWRVAGRDNRIDLVLLMMQLAKRQINCIWVEAGAQLAG
ALLQAGLVDELIVYMAPKLLGDNGRALCELPGLQHLADAPEFIFSDIRQVGPDLRLRLKPVY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 2e-57 47
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 2e-57 47