Gene Information

Name : Rahaq2_2781 (Rahaq2_2781)
Accession : YP_005200755.1
Strain : Rahnella aquatilis CIP 78.65
Genome accession: NC_016818
Putative virulence/resistance : Virulence
Product : psp operon transcriptional activator PspF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2995748 - 2996749 bp
Length : 1002 bp
Strand : +
Note : PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: psp operon transcriptional activator PspF

DNA sequence : 
ATGACGGATAACACAGACAATTTACTCGGCGAAGCCAACGCCTTTATTGAAGTGCTGGAACAGGTTTCACAACTGGCGAA
ACTCAACAAACCGGTTCTGGTCACCGGCGAACGCGGCAGCGGAAAAGAACTGATTGCACATCGTCTGCATTATCTGTCGC
CCCGCTGGCAGGGGCCGTTCATTTCACTTAACTGTGCGGCGCTCAATGAAAACCTGCTGGACTCCGAATTGTTCGGCCAT
GAAGCGGGGGCATTTACCGGCGCACAGAAACGTCATCTCGGGCGCTTTGAACGTGCGGATGGCGGCACGTTATTTCTTGA
TGAACTGGCGACAGCGCCAATGCTGGTGCAGGAAAAACTCCTGCGCGTGATCGAATACGGCCATCTGGAACGCGTCGGGG
GCAGCCAGCCGTTACAGGTGGATGTCCGTCTGGTGTGTGCGACCAATGATGATTTGCCGATGCTGGCCGCTGAAGGAAAA
TTCCGCGCCGACCTGCTCGACCGGCTGGCGTTTGATGTGGTGCAACTGCCTCCCCTGCGCGAACGCCAGCAGGACATCAT
GTTGCTGGCCGAACATTTTGCCATTCAGATGTGTCGTGAACTGTCTCTTCCTTTGTTCCCCGGATTTACGGAATATGCCC
GCGAAACCCTGCTGGCCTACCGCTGGCCGGGAAATATCCGCGAGCTGAAAAACGTTGTGGAGCGATCGATGTACCGCCAC
GGTACCAGTGATTTTCCGCTCGATAATATTATCCTGAACCCGTTTGCGCAGCGCACCGCCGTAACGGCTGACGACAGTAA
GCACGATAACCTGCCGACGCTGCCGCTGGATCTTAAGCACTGGGTCACCGGGCAGGAAAAAAATCTGATCGAACAGGCTT
TACGGCAGGCGCGGTTTAATCAGCGTAAAGCGGCTGAGCTGCTGAACGTGACCTATCATCAGTTACGCGGAATGTTGAAG
AAACACGGGATACAGGTGAATTCGCAGGAAACGGCTGAATAG

Protein sequence : 
MTDNTDNLLGEANAFIEVLEQVSQLAKLNKPVLVTGERGSGKELIAHRLHYLSPRWQGPFISLNCAALNENLLDSELFGH
EAGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGHLERVGGSQPLQVDVRLVCATNDDLPMLAAEGK
FRADLLDRLAFDVVQLPPLRERQQDIMLLAEHFAIQMCRELSLPLFPGFTEYARETLLAYRWPGNIRELKNVVERSMYRH
GTSDFPLDNIILNPFAQRTAVTADDSKHDNLPTLPLDLKHWVTGQEKNLIEQALRQARFNQRKAAELLNVTYHQLRGMLK
KHGIQVNSQETAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpRS ABA47311.1 HrpRS Virulence S-PAI Protein 2e-34 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq2_2781 YP_005200755.1 psp operon transcriptional activator PspF VFG1214 Protein 5e-48 41