Gene Information

Name : Rahaq2_0178 (Rahaq2_0178)
Accession : YP_005198268.1
Strain : Rahnella aquatilis CIP 78.65
Genome accession: NC_016818
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 189791 - 191056 bp
Length : 1266 bp
Strand : -
Note : PFAM: PTS system sugar-specific permease component

DNA sequence :
ATGTCTTTCCTTCACTTTATTGTCAATGACGTATTAGGCCAGGCATCAATTTTAATATCACTGATCGCCATGATTGGTCT
GATCGCTTTAAAGAAAAGCACTGGGCAAATTATTACCGGCACATTAAAAACGCTGCTGGGTTTTTTGGTCCTGCTTTCCG
GTGCCAGCATTATAGTTAATGCCCTGACCTTTCTGGGGGAAATATTCCAGAAAGGGTTTCATATGCGCGGGATTGTTACC
GACGTCGGCTCAATTGCCGGTATCGCTCAGCAAACCCTCGGGCGTGAAACCGCATTAATTATGGTTCTGGCGTTTATCGT
CAATATCCTGATTGCCCGCCTGACCCGTTTCAAATACATCTTTCTCACCGGACAGGCCTCCCTGTGGATGGCCACGGTGT
GTTCCGTTATCGGGTATATGGGCGGTTTGCGCGGTACGGAGCTGATCCTGACCGGCGGCATTATTGCGGGCATTATGGCC
GTCGGGATGCCGGTGCTGGCTCAGCCGATCGTGCGTAAAATCACCGGTTCCGATGATATTGCACTCGGCCATTTTTGCAC
CATCGGTTATATCGTGCAGGCGGGCGTGGCGAAAATCACCGGCGATGTCAGTAAAAGCACCGAAGATTTCGAGCTGCCGC
AATCTTTCTCTTTTCTGCAGGACACCTACCTGTCGATGATGGTGGTGATGATCCCGATTTACCTGATCCCGGCGATTGCC
GCAGGGCCGGAAGTCGTCGCGCCTTACGCCAGTAACGTCAACTATCTGGTCTATTCGTTCCTGCAATCCATTCAGTTTGT
GGTCGGTGTTTACGTTCTGCTGTCGGGTGTCCGCCTGTTGCTGGCAGAAATCGTACCGGCATTTCGCGGCATCGCCCTGC
GCATCGTGCCGAACGCCATCCCGGCACTCGATTGCCCGGTGCTGTTCCCGTATGCACCGAACGCCGTCATTATCGGCTTC
ATCTCCACCACCATTGGTTCCGTCATCGGCATGTTCCTGTTTCCGAGCCTCGGGCTGGCGATGATTTTACCGGGCATGCT
GACCAACTTCTTCGCGGGTGGCACAGCGGGTATCTTCGGCAATGCCGTCGGCGGACGGCGCGGCGCAATTATCGGCGGTA
TCTTCCACGGCCTGTTTATCACCCTGCTGCCTGCGCTGTTGCTGCCGCTGCTGGGTAAGTTTGGCTTCTCGAATGTGACG
TTCAGTGACTCAGACGTCATCAGCGTCGGGCTGGTATTCGGCCACATTCTCAACTTCTTCCACTAA

Protein sequence :
MSFLHFIVNDVLGQASILISLIAMIGLIALKKSTGQIITGTLKTLLGFLVLLSGASIIVNALTFLGEIFQKGFHMRGIVT
DVGSIAGIAQQTLGRETALIMVLAFIVNILIARLTRFKYIFLTGQASLWMATVCSVIGYMGGLRGTELILTGGIIAGIMA
VGMPVLAQPIVRKITGSDDIALGHFCTIGYIVQAGVAKITGDVSKSTEDFELPQSFSFLQDTYLSMMVVMIPIYLIPAIA
AGPEVVAPYASNVNYLVYSFLQSIQFVVGVYVLLSGVRLLLAEIVPAFRGIALRIVPNAIPALDCPVLFPYAPNAVIIGF
ISTTIGSVIGMFLFPSLGLAMILPGMLTNFFAGGTAGIFGNAVGGRRGAIIGGIFHGLFITLLPALLLPLLGKFGFSNVT
FSDSDVISVGLVFGHILNFFH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vpeC ADD91725.1 putative PTS system-specific IIC component VpeC Virulence PAI-I AL862 Protein 3e-68 46
ORF8 AAK27335.1 unknown Not tested PAI-I AL862 Protein 4e-68 46
unnamed CAC39291.1 hypothetical protein Not tested LPA Protein 3e-68 46