Gene Information

Name : Rahaq2_1377 (Rahaq2_1377)
Accession : YP_005199396.1
Strain : Rahnella aquatilis CIP 78.65
Genome accession: NC_016818
Putative virulence/resistance : Virulence
Product : DNA-binding domain-containing protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1447800 - 1448186 bp
Length : 387 bp
Strand : -
Note : PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family

DNA sequence : 
ATGGCTCAAGACATTCATATCGCTATCGTCTGCGCACTCAGCAAATGGATTGAAGGCCATCTTGGTCGTGTGATCCATCT
TGAAGAACTGGCTGAGTATTCAGGCTATTCGCTCTGGCACATGCAAAAACTGTTCAAAGAATCGACAGGCATTTCTCTGG
GGAAGTACATCAGGGAACGCCGTCTGGCGAGTGCTGTTTATCAGCTGAGCAGCAGTGAAACCCCGATTTTTGATATCGCG
ATGGATTTCGGTTTCGGTTCGCAATCGCATTTCACTTACATGTTCCGCAAGCGTTTCAACATAACGCCGCATGAATTCCG
TCAGAACCCGGACATCAAACTTGATGTATCTCCCCCGCTGCATCTGATCCACCAGAAATCAGCCTGA

Protein sequence : 
MAQDIHIAIVCALSKWIEGHLGRVIHLEELAEYSGYSLWHMQKLFKESTGISLGKYIRERRLASAVYQLSSSETPIFDIA
MDFGFGSQSHFTYMFRKRFNITPHEFRQNPDIKLDVSPPLHLIHQKSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 6e-20 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq2_1377 YP_005199396.1 DNA-binding domain-containing protein CP000647.1.gene1624. Protein 8e-18 45
Rahaq2_1377 YP_005199396.1 DNA-binding domain-containing protein CP000034.1.gene4505. Protein 4e-20 43
Rahaq2_1377 YP_005199396.1 DNA-binding domain-containing protein BAC0371 Protein 2e-20 43
Rahaq2_1377 YP_005199396.1 DNA-binding domain-containing protein NC_002695.1.914293.p Protein 2e-20 43
Rahaq2_1377 YP_005199396.1 DNA-binding domain-containing protein CP001138.1.gene4488. Protein 2e-20 43
Rahaq2_1377 YP_005199396.1 DNA-binding domain-containing protein CP001918.1.gene327.p Protein 1e-19 42
Rahaq2_1377 YP_005199396.1 DNA-binding domain-containing protein CP000647.1.gene4499. Protein 2e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq2_1377 YP_005199396.1 DNA-binding domain-containing protein VFG0585 Protein 2e-20 43