Gene Information

Name : sitD (PANA5342_pPANA10021)
Accession : YP_005197791.1
Strain :
Genome accession: NC_016817
Putative virulence/resistance : Virulence
Product : Mn+2/Fe+2 ABC transporter inner membrane subunit SitD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 16036 - 16866 bp
Length : 831 bp
Strand : +
Note : -

DNA sequence : 
ATGATGTGGCTGGAACCTTTTCAGTTTGGTTTTATGAATCATGCTTTACTCATCGCGGCGGTGGTTGCCGTGCCTTGTGC
GCTGCTGTCAGTCTTTTTGGTCCTGAAGGGCTGGGCGTTGATGGGTGATGCGATGAGCCATGCTGTCTTTCCAGGCATAG
TGCTGGCGTGGATGATGGCATTACCTCTGGCAGTGGGCGCATTCAGTGCCGGTTTGTTTTGTGCTGTCGCCAGTGGCTAC
CTTAAAGAGAACAGCAGAATCAAGCAGGACACGGTTCTGGGTATTGTTTTTTCCGGGATGTTTGCGGTTGGCCTGATTTT
GTACATCGCCCTGAAACCGGAGATCCACCTCGACCATATTTTATTCGGCGATATGCTGGGGATCAGCCAAAGCGATATTT
TTCAGACGTTAGGCATTGCCGCTGTGATTGTCGCTGTCGTCGGCCTGAAATGGCGCGATTTCATGCTGTTCAGCTTTGAT
CCTCAACAGGCTCAGGTGTGCGGGCTTTCGGTGCGCTGGCTGCATTATAGCCTGTTGTGTATGGTGTCTCTGACCATTGT
GGCAACGCTTAAGGCAGTAGGGATTATTTTATCGATTTCATTGCTTATTGCGCCCGGAGCGATTGCCGTTTTGCTGACGG
ATCGGTTTTCCCATGCGTTGATACTGGCGACGTTTGTTTCGCTGGTTGTCTCACTCTGCGGCGTTTATCTCTCATTTTTT
ATTGACAGTGCTCCCGCACCAACCATTGTGGTGCTTTTCGCTCTGGTCTTTATCGTCAGCTTTATCACCACTCACTATAA
ACTTTCTCGCCTGTCTAAATCCTCCTGCTGA

Protein sequence : 
MMWLEPFQFGFMNHALLIAAVVAVPCALLSVFLVLKGWALMGDAMSHAVFPGIVLAWMMALPLAVGAFSAGLFCAVASGY
LKENSRIKQDTVLGIVFSGMFAVGLILYIALKPEIHLDHILFGDMLGISQSDIFQTLGIAAVIVAVVGLKWRDFMLFSFD
PQQAQVCGLSVRWLHYSLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTDRFSHALILATFVSLVVSLCGVYLSFF
IDSAPAPTIVVLFALVFIVSFITTHYKLSRLSKSSC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-86 70
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-85 70
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-85 70
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-85 70
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-86 70
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-41 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-41 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-41 41
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-41 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-41 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_005197791.1 Mn+2/Fe+2 ABC transporter inner membrane subunit SitD BAC0352 Protein 3e-86 70
sitD YP_005197791.1 Mn+2/Fe+2 ABC transporter inner membrane subunit SitD BAC0442 Protein 2e-65 57
sitD YP_005197791.1 Mn+2/Fe+2 ABC transporter inner membrane subunit SitD BAC0351 Protein 2e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_005197791.1 Mn+2/Fe+2 ABC transporter inner membrane subunit SitD VFG0528 Protein 3e-86 70
sitD YP_005197791.1 Mn+2/Fe+2 ABC transporter inner membrane subunit SitD VFG0527 Protein 1e-41 41