Gene Information

Name : sitC (PANA5342_pPANA10020)
Accession : YP_005197790.1
Strain :
Genome accession: NC_016817
Putative virulence/resistance : Virulence
Product : ABC-type Mn2+/Zn2+ transport system, permease component SitC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 15179 - 16039 bp
Length : 861 bp
Strand : +
Note : -

DNA sequence : 
ATGACCGCGCTCCTTGAACCTTTTGGTTATCAATATATGTTGAACGCCATGTGGATTTCAGCCATGGTCGGCGGGCTGTG
CGCCTTTCTGTCCTGTTATCTGATGTTAAAGGGCTGGTCGCTTATTGGTGATGCGCTGTCACACTCTATTGTTCCCGGTG
TCGCGGGCGCTTACATGCTCGGACTGCCGTTTGCGTTGGGCGCTTTTTTATCAGGGGGCTTAGCGGCAGGGAGCATGCTG
TTGCTCAACCAGCGCACGCGGCTGAAAGAAGATACCATCATCGGCCTGATTTTTTCTTCGTTCTTCGGCCTTGGGCTGTT
TATGGTTTCCCTCAATCCCACTTCGGTAAATATTCAGACTATCGTGCTGGGCAATATTCTGGCTATTGCGCCTTCCGATA
TCATTCAGCTGCTTATTATCGGACTGACTTCTGTCGCCATTTTGTTTTTCAAATGGAAAGATTTAATGGTCACCTTTTTC
GATGAAAACCATGCTCGCGCCGTTGGTTTAAATCCGGTGCGTCTTAAGATCTTATTTTTCACTTTGTTGGCCGTTTCGAC
CGTGGCTGCGTTACAAACTGTGGGCGCGTTTCTGGTTATCTGTCTGGTTGTCACGCCAGGGGCAACGGCCTGGTTGCTGA
CCGATCGCTTTCCCCGGCTACTTGCCATCGCGGTTGCCATTGGCAGCATCACGAGCTTTATGGGCGCGTGGGCAAGTTAT
TATCTTGATGGCGCAACGGGCGGCATTATTGTCGTTGCGCAAACGTTACTTTTTTTACTGGCCTTCATCTTTGCGCCTAA
GCACGGTGTGCTGGCGAATCGTCGTCGTGCCCAGGCGCATGCTGTGCGGGAGACAAGATGA

Protein sequence : 
MTALLEPFGYQYMLNAMWISAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFALGAFLSGGLAAGSML
LLNQRTRLKEDTIIGLIFSSFFGLGLFMVSLNPTSVNIQTIVLGNILAIAPSDIIQLLIIGLTSVAILFFKWKDLMVTFF
DENHARAVGLNPVRLKILFFTLLAVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLAIAVAIGSITSFMGAWASY
YLDGATGGIIVVAQTLLFLLAFIFAPKHGVLANRRRAQAHAVRETR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-86 86
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-86 86
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-86 86
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-86 86
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-86 86
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-36 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-36 43
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-36 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-36 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_005197790.1 ABC-type Mn2+/Zn2+ transport system, permease component SitC BAC0351 Protein 7e-87 86
sitC YP_005197790.1 ABC-type Mn2+/Zn2+ transport system, permease component SitC BAC0441 Protein 1e-65 68
sitC YP_005197790.1 ABC-type Mn2+/Zn2+ transport system, permease component SitC BAC0352 Protein 1e-36 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_005197790.1 ABC-type Mn2+/Zn2+ transport system, permease component SitC VFG0527 Protein 7e-87 86
sitC YP_005197790.1 ABC-type Mn2+/Zn2+ transport system, permease component SitC VFG0528 Protein 1e-36 43