Gene Information

Name : sitA (PANA5342_pPANA10018)
Accession : YP_005197788.1
Strain :
Genome accession: NC_016817
Putative virulence/resistance : Virulence
Product : iron/manganese transport system periplasmic binding protein SitA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 13456 - 14364 bp
Length : 909 bp
Strand : +
Note : -

DNA sequence : 
ATGGTGAGTAAATTATCGGTTTCAACACTTGGCATGATGTTGAGTGTTTTTATTAGCCTCAACAGCTATGCGGCTGATAA
ATTTAAGGTTGTCACGACCTTCACCGTTATTGCTGACATGGCAAAAAATGTGGCAGGGGAGGCGGCTGAGGTGACGTCAA
TCACCAAACCTGGTGCCGAAATTCATGAGTATCAACCGACCCCTGGCGATATTAAACGTGCACAGGGTGCACAGTTGGTG
ATGGCTAATGGTTTGAATCTGGAATTGTGGTTTCAACGTTTTTATCAACATCTCAAAGGCGTTCCTGAAGTTGTTGTTTC
AACGGGCGTTTCTCCGATAGGAATAGGGGAAGGACCTTATAATGGCAAACCCAATCCTCACGCATGGATGTCACCGGATA
ACGCACTGATCTATGTGGATAATATTCGTGATGCGCTTGTAAAGCACGATCCGGCCAATGCCAGCACCTATCAGCAGAAC
GCAGCCGCCTATAAGCAAAAGATCGTTGCAGCACTCGAACCTGTTCGTAAGCAACTCGCCGCCATACCAGAAAACAAACG
CTGGATAGTGACCAGCGAAGGCGCTTTTTCCTATCTGGCACGTGATTTAGGGCTTAAAGAACTTTATCTCTGGCCAATCA
ATGCCGATCAGCAGGGAACGCCACAGCAGGTTCGGAACGTCATCGATCAGATGAAAAAGAATGCCATTCCCGTCATCTTC
AGTGAAAGCACCGTCTCCGATAAACCTGCACGCCAGGTCGCGCGCGAAACGCACGCACATTATGGCGGTGTGTTATACGT
TGACTCATTAAGCGCGGCCAGGGGGCCTGTGCCAACGTATCTTGACCTGTTGAGAGTTACCACCCAGACGCTGGTTAACG
GCATTCAGGACGGGATGAAAACACGATGA

Protein sequence : 
MVSKLSVSTLGMMLSVFISLNSYAADKFKVVTTFTVIADMAKNVAGEAAEVTSITKPGAEIHEYQPTPGDIKRAQGAQLV
MANGLNLELWFQRFYQHLKGVPEVVVSTGVSPIGIGEGPYNGKPNPHAWMSPDNALIYVDNIRDALVKHDPANASTYQQN
AAAYKQKIVAALEPVRKQLAAIPENKRWIVTSEGAFSYLARDLGLKELYLWPINADQQGTPQQVRNVIDQMKKNAIPVIF
SESTVSDKPARQVARETHAHYGGVLYVDSLSAARGPVPTYLDLLRVTTQTLVNGIQDGMKTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 6e-109 75
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 8e-109 75
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 8e-109 75
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 8e-109 75
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-109 75

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA YP_005197788.1 iron/manganese transport system periplasmic binding protein SitA BAC0349 Protein 4e-109 75
sitA YP_005197788.1 iron/manganese transport system periplasmic binding protein SitA BAC0439 Protein 1e-88 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA YP_005197788.1 iron/manganese transport system periplasmic binding protein SitA VFG0525 Protein 3e-109 75