Gene Information

Name : ygiX (PANA5342_0082)
Accession : YP_005193512.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 87633 - 88304 bp
Length : 672 bp
Strand : -
Note : -

DNA sequence : 
ATGCGAATTTTACTGATTGAAGACGACCGCCTGATTGGAGACGGCATTAAAGCGGGACTCAGTAAGCTGGGATTCAGCGT
TGACTGGTTTGTCTCTGGCGAGGCCGGTTTTCAGGCATTAACGGCGGCGCCGTGGGATGCGGTCGTACTCGATTTATCAC
TGCCTGAGCGTGACGGGCTGGACATATTGCGTCAATGGCGTCAGCAGGGGCACGACGTCCCGGTTCTTATCCTTACCGCC
CGCGATGCGCTTGATCAACGCGTTGAAGGATTACAGATGGGGGCTGACGATTACCTGTGCAAACCCTTTGCCCTTACAGA
AGTTGCCGCACGCTTACAGGCACTGATTCGCCGCCGTCACGGGCAACTCCAGCCCGAACTGCGTCATGGCGATGTAGTGT
TGATTCCCGGTAATCTCAGCGTGGAAAGAAACGGCGAAAATATCGCGTTAAAAAGCCGTGAGCTGGCCCTGCTTGAGCTG
TTTATGCGAAATCCGGATCGGGTACTGACGCGAAGCCAGCTCGAAGAAAAGCTCTATACCTGGGATACCGAAGTGTCGAG
CAATGCGGTAGAAGTGCATATCCATCATCTGCGTAAAAAACTCGGTAACCGCTTTATCCGCACCATCCACGGCGTGGGCT
ATACGCTGGGGGAAAGCGAATGCGATCGATGA

Protein sequence : 
MRILLIEDDRLIGDGIKAGLSKLGFSVDWFVSGEAGFQALTAAPWDAVVLDLSLPERDGLDILRQWRQQGHDVPVLILTA
RDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRHGQLQPELRHGDVVLIPGNLSVERNGENIALKSRELALLEL
FMRNPDRVLTRSQLEEKLYTWDTEVSSNAVEVHIHHLRKKLGNRFIRTIHGVGYTLGESECDR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-37 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_005193512.1 DNA-binding transcriptional regulator BAC0487 Protein 4e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_005193512.1 DNA-binding transcriptional regulator VFG1390 Protein 2e-35 43
ygiX YP_005193512.1 DNA-binding transcriptional regulator VFG0473 Protein 4e-39 43