Gene Information

Name : pagC (PANA5342_4327)
Accession : YP_005197757.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : virulence membrane protein PagC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4590806 - 4591366 bp
Length : 561 bp
Strand : -
Note : -

DNA sequence : 
ATGAACAAGGTAATTATTTCCGCTATTTCCTGTGCGCTGCTGAGTGGTGCGGTGCCCGCAGTGGCAAGTCAAACGCTGTC
TGTAGGCTATGCGCAGAGTAAAGTTGAAGATTTTAAAAATATGCCCGGTATGAATCTGCAATATCGTTATGAGTGGGACT
CGCCGGTTAGCGTAGTGGCCTCTTTCACCACTCTGGAGAACAGTGAGGACAGCAACAGTTCTTTTTTTCAGCGCCATACG
TCCGATCACGTAAGCGCAAAATATTATTCTTTACTGGCGGGGCCGGCATATCGTCTGAATCAACGGGTCAGTGTTTATGC
GCTGGCCGGCTTTTCCCATGCCGCGATGAGCCGCCAGTATCACGGCTATGATTCTCAGGGAATGCCTCAGGACATCCAGT
TTTCGGAGACGACCAATGCGTTGGCTTACGGGGCCGGTATTATCATTAACCCGGTTGATTATCTGTCTGTAACCTTGGGT
TACGAAGGTTCCCGCACCCGGGTTGAAGGAGAGCAACGCGCTGTTAACGGCGTTAATCTGGGGGTGGGTTACCGTTTCTG
A

Protein sequence : 
MNKVIISAISCALLSGAVPAVASQTLSVGYAQSKVEDFKNMPGMNLQYRYEWDSPVSVVASFTTLENSEDSNSSFFQRHT
SDHVSAKYYSLLAGPAYRLNQRVSVYALAGFSHAAMSRQYHGYDSQGMPQDIQFSETTNALAYGAGIIINPVDYLSVTLG
YEGSRTRVEGEQRAVNGVNLGVGYRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4321 NP_289546.1 PagC-like membrane protein Not tested OI-122 Protein 5e-30 47
unnamed ADD91732.1 putative PagC-like membrane protein Not tested PAI-I AL862 Protein 3e-30 46
Z4321 AAQ19134.1 putative PagC-like membrane protein Not tested PAI I CL3 Protein 2e-29 46
pagC AGI37351.1 PagC Virulence OI-122 Protein 6e-22 45
pagC AGI37348.1 PagC Virulence OI-122 Protein 8e-22 45
pagC AGI37337.1 PagC Virulence OI-122 Protein 4e-21 43
pagC AGI37342.1 PagC Virulence OI-122 Protein 4e-21 43
pagC AGI37344.1 PagC Virulence OI-122 Protein 4e-21 43
pagC AGI37346.1 PagC Virulence OI-122 Protein 4e-21 43
pagC AGI37350.1 PagC Virulence OI-122 Protein 4e-21 43
pagC AGI37340.1 PagC Virulence OI-122 Protein 1e-21 43
pagC AGI37341.1 PagC Virulence OI-122 Protein 5e-21 43
pagC AGI37347.1 PagC Virulence OI-122 Protein 1e-21 43
pagC AGI37349.1 PagC Virulence OI-122 Protein 5e-21 43
pagC AGI37352.1 PagC Virulence OI-122 Protein 5e-21 43
pagC AGI37343.1 PagC Virulence OI-122 Protein 8e-21 42
pagC AGI37353.1 PagC Virulence OI-122 Protein 8e-21 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pagC YP_005197757.1 virulence membrane protein PagC VFG0442 Protein 4e-21 41