Gene Information

Name : iucD (PANA5342_4061)
Accession : YP_005197491.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : L-lysine 6-monooxygenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4279533 - 4280867 bp
Length : 1335 bp
Strand : -
Note : -

DNA sequence : 
ATGACAAACACTGTTGATTTTATTGGCGTTGGCATTGGCCCGTTTAACCTGAGTATCGCGGCGCTGGCACACGAAGCTGA
AGGCTTTACCAGCCAGTTTTTAGACAGTCGCCCAGATTTTGCCTGGCATCCCGGTATGCTGGTGCCTGACTGCCATATGC
AGACCTCGTTTTTAAAAGATCTGGTCTCCGCGGTCGCGCCCACCAGCCCGTTCAGCTTTGTGAACTATCTGGTGAAGCGT
AAAAAGTTTTACCGCTTTATGACCACCGAGTTACGTACCGTCTCGCGCGATGAGTTTTCCGACTATCTGCGCTGGGCTGC
CGAGGGCATGAACAACCTGCGCTTTAATCACACGGTGGAACGCATCGATTTTGATGAGGCCAATAAACGCTTTGTGATTC
ACAGCAACGGTGGGGAAAGCTATGCCCGCAACATCTGTCTGGGCATTGGCAAGCAGCCCTACCTGCCGCCCTGCGTAAAC
CGCATCAGCGCCACCTGTTTCCACGCCAGCGAAATGAGCCTGCGTAAACCCGACCTGCGCGGCAAGCGTGTGGCGGTGAT
TGGCGGCGGTCAGAGTGGTGCCGATCTGTTCCTCAACGCCTTCCGGGGTGAATGGGGCGAACCGGCTGAGGTCAGTTGGG
TATCACGCCGCAACAATTTTAACGCCCTGGATGAGGCCGCTTTTGCCAACGAGTACTTCACGCCAGAATACGTTTCCAGC
TTTGTCGGTCTGAACGAGGCTGCCCGACAGAAAATGCTGGCTGAACAGAAGATGACCTCGGACGGCATCACGGCAGATTC
CCTGCTGACGATTTATCGCGAGCTGTATCATCGCTTTGAAGTGCAGCGTCAGCCGCGCAATGCGCACCTGCTGCCGAGCC
GCTCGGTCATTGAACTCAACAGTCATCACCAGGGCTGGCAGCTTCAGTTGCAGCATCAGCTTGACCAGGGCTACGACCTT
ATCGAATGCGATGTGGTGATTTTCGCCACCGGCTACCGGCCTGCGCTGCCAGAACTGCTCTCCCCCCTGATGAGCCGCCT
GACCATGAAAGATGAGTGCACGTTCAGCGTGCGTGAGGACTTCACGCTTGAGTGGAACGGGCCAAAAGAAAATAACATCT
TTGCGGTGAACGCCAGTATGCAAACCCACGGTATCGCGGAGCCTCAGCTCAGCCTGATGGCATGGCGATCCGCCCGTATT
CTGAATCGCGCACTGGGGCGCGATTTGTTCGATCTCAGCACGCCGCCCGCCCTGATCCAGTGGCGCAGCGTCAGCCGGGA
AAAACCGCAGCACGGCGCTGCGTCCACTAAAAACTATACCGAGTCCTTGGGGTAA

Protein sequence : 
MTNTVDFIGVGIGPFNLSIAALAHEAEGFTSQFLDSRPDFAWHPGMLVPDCHMQTSFLKDLVSAVAPTSPFSFVNYLVKR
KKFYRFMTTELRTVSRDEFSDYLRWAAEGMNNLRFNHTVERIDFDEANKRFVIHSNGGESYARNICLGIGKQPYLPPCVN
RISATCFHASEMSLRKPDLRGKRVAVIGGGQSGADLFLNAFRGEWGEPAEVSWVSRRNNFNALDEAAFANEYFTPEYVSS
FVGLNEAARQKMLAEQKMTSDGITADSLLTIYRELYHRFEVQRQPRNAHLLPSRSVIELNSHHQGWQLQLQHQLDQGYDL
IECDVVIFATGYRPALPELLSPLMSRLTMKDECTFSVREDFTLEWNGPKENNIFAVNASMQTHGIAEPQLSLMAWRSARI
LNRALGRDLFDLSTPPALIQWRSVSREKPQHGAASTKNYTESLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iucD AAK71634.1 IucD Virulence SHI-3 Protein 2e-158 74
iucD AAD44749.1 IucD Virulence SHI-2 Protein 4e-160 74
iucD NP_839220.1 lysine:N6-hydroxylase Virulence SHI-2 Protein 5e-160 74
iucD NP_709457.1 lysine:N6-hydroxylase Virulence SHI-2 Protein 5e-160 74
iucD YP_002414043.1 L-lysine 6-monooxygenase Virulence Not named Protein 3e-160 74

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
iucD YP_005197491.1 L-lysine 6-monooxygenase VFG0937 Protein 1e-160 74
iucD YP_005197491.1 L-lysine 6-monooxygenase VFG0618 Protein 2e-160 74
iucD YP_005197491.1 L-lysine 6-monooxygenase VFG1084 Protein 1e-158 74