Gene Information

Name : ssb1 (PANA5342_4012)
Accession : YP_005197442.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : ssDNA-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4226170 - 4226724 bp
Length : 555 bp
Strand : -
Note : -

DNA sequence : 
ATGTCCGCACGCGGCGTCAACAAAGTTATCCTGGTCGGCAATCTCGGTCAGGACCCCGAAGTTCGTTACATGCCAAACGG
TACTGCAGTGACCAGCCTTTCAGTGGCCACTTCAGAAACCTGGCGTGACAAACAAACCGGTGAAAACCGGGAAAAAACCG
AATGGCATCGCGTCGTTCTGTTTGGAAAGCTGGCTGAAATAGCCGGTGAATACCTGCGTAAGGGTTCACAGGCCTATATC
GAAGGCAAACTGAGAACACGGGAATGGCAGGATAGCGAAGGTACTAAACGCTATACGACCGAAATCGTGGTTGATGTAAA
CGGAACGATGCAGATGCTGGGCGGGGCTAAAAACAGCACCAACACCAGTGGAAACAATAAGCCGACAGGCCAGCAGGACG
GATGGGGTAAGCCACAACAGCCTCAGCCTTCTCAGGCACAACAGTCGGCTCCGAGTAATCCGGCGAACGAGCCGCCAATG
GACTTTGACGATGACATACCGTTCCTCGGACACGGCTATGGCGTCTGTCGTAAGGCTATTTACGCAATTTCGTAA

Protein sequence : 
MSARGVNKVILVGNLGQDPEVRYMPNGTAVTSLSVATSETWRDKQTGENREKTEWHRVVLFGKLAEIAGEYLRKGSQAYI
EGKLRTREWQDSEGTKRYTTEIVVDVNGTMQMLGGAKNSTNTSGNNKPTGQQDGWGKPQQPQPSQAQQSAPSNPANEPPM
DFDDDIPFLGHGYGVCRKAIYAIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssB NP_458627.1 single strand binding protein Not tested SPI-7 Protein 8e-47 61
ssb NP_807839.1 single-stranded DNA-binding protein Not tested SPI-7 Protein 8e-47 61
ssb AAF14810.1 single strand binding protein Not tested SPI-7 Protein 6e-47 61
ssb AAC26638.1 single-strand binding protein Not tested SPI-4 Protein 7e-33 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssb1 YP_005197442.1 ssDNA-binding protein VFG0576 Protein 7e-41 60