Gene Information

Name : PANA5342_3979 (PANA5342_3979)
Accession : YP_005197409.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Unknown
Product : integrating conjugative element protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4197643 - 4198302 bp
Length : 660 bp
Strand : -
Note : -

DNA sequence :
ATGAGCCGGTTTCGTAACGGTATCACGGCGCGTGATAACCACATTTTTTCCCTGCGGATTGCCTGCGTGCTGCTGTTCGC
GGGCATGCTGGTCACCTCAGTCGGCTGGATGCGGGCGCCCTCGGATATGACTGTCCATATCCCGCCCGACCTGCGCTCGG
GCAGCACGCAGAAATGGTGGGTGATTTCGCCCTCAACGGTGTACGCCTTTGCGTTCTATATCTTCCAGCAGCTCAACGCC
TGGCCGACCAACGGTGAGGTGGATTATGCGGCGAAGATTGCCCAGCTCAGCCCTTACCTGACGCCGTCATGCCAGGATTT
TCTGAACAGGGACTATGAGTTTCGTAAAAACAGCGGCGAGCTCAAGGACCGCGTGCGCGTGGTGTATGAAATTCCCCGTC
GCGGGTACAGCGACAGCAGCGTTGACATCCTGAGTGACGATCGCTGGGTGGTCCGGCTCGACCTGATAGCTGACGAGTAC
TACCACGCCGAGAAGGTCAAGCGGGCGCTTGTCCGCTATCCCCTCAAGGTCGTGCGCTGGGAAGGTGATCCTGCGCGCAA
CCCGTTTGGCATGGCGCTTGACTGCTATGCCTCCACGCCGCAGCAGCTCGAAGCCATGCCGCAGGTGGAGCCAGAGAAAA
AATCAGGAGTCTTCCAGTGA

Protein sequence :
MSRFRNGITARDNHIFSLRIACVLLFAGMLVTSVGWMRAPSDMTVHIPPDLRSGSTQKWWVISPSTVYAFAFYIFQQLNA
WPTNGEVDYAAKIAQLSPYLTPSCQDFLNRDYEFRKNSGELKDRVRVVYEIPRRGYSDSSVDILSDDRWVVRLDLIADEY
YHAEKVKRALVRYPLKVVRWEGDPARNPFGMALDCYASTPQQLEAMPQVEPEKKSGVFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
api35 CAF28509.1 putative exported protein Not tested YAPI Protein 1e-78 69
YpsIP31758_3709 YP_001402663.1 hypothetical protein Not tested YAPI Protein 4e-78 69
YE3486 YP_001007645.1 hypothetical protein Not tested YAPI Protein 7e-79 68
STY4568 NP_458653.1 possible exported protein Not tested SPI-7 Protein 8e-71 68
t4265 NP_807863.1 hypothetical protein Not tested SPI-7 Protein 8e-71 68
PMI2581 YP_002152300.1 hypothetical protein Not tested Not named Protein 3e-66 62
ORF C51 AAN62145.1 hypothetical protein Not tested PAGI-2(C) Protein 7e-61 57
ORF SG61 AAN62283.1 hypothetical protein Not tested PAGI-3(SG) Protein 8e-60 56
pph80 CAI36121.1 hypothetical protein Not tested PPHGI-1 Protein 3e-54 52
unnamed ABR13366.1 hypothetical protein Not tested PAGI-5 Protein 1e-46 47
RL026 AAP84153.1 conserved hypothetical protein Not tested PAPI-1 Protein 1e-46 47
EXA37 ABD94646.1 conserved hypothetical protein Not tested ExoU island A Protein 5e-47 47
Pmu_03110 YP_005176210.1 integrating conjugative element protein, PFL family Not tested ICEPmu1 Protein 2e-42 45