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Name : traF1 (PANA5342_3917) Accession : YP_005197347.1 Strain : Pantoea ananatis LMG 5342 Genome accession: NC_016816 Putative virulence/resistance : Unknown Product : type IV pilus protein, TraF Function : - COG functional category : - COG ID : - EC number : - Position : 4132852 - 4134060 bp Length : 1209 bp Strand : + Note : - DNA sequence : ATGATGAAAGCAAAACTGTTAACCCGCAGCATCACTCTGGCATTACTGGCTTCAGCCGTGCCGTCAGTGAATGCTGCAAC AACCTGGACCGAAGCGCGTAACGACGCCATGGGGGGAACCGGCGTGGCCTCTTCCGGTTATCTTGCCGCAGCGCTGGCCA ACCCCGCGCTGATGACCCGCCACGATGCCGGTGACGACGTCGGGCTCATCCTGCCGGGCGTGGGGGCACAAATCAGCGAT CCGGATAACCTGCGTGACGGACTGGACAGGGTAAAAAGCACCTTTGACGACTTCCGCGAATCAGCGGGCACCGGCAACAG CTCACGACAGGCGGCCGCGCTGAAACTGGCCCTGCAGGACGTCGACGGCGACAGCGGGCATGCCAGTGCCGGGCTTTCTG CGGTGATTGCCATTCCCAATGACACCCTCCCTTTCGCCTTTGTGGCCAGAGGCTGGGGACAGGCGAAGGTCCGCACTGAA ATCACACAGCGTGACCTGGCGTATCTCGATGCGGCACAGAGCGGCATTTTCTCACCGACTCAGACGGATATTGACCAGAT GACCTCCCGGGCGCAGGGCGTTGCCGCACTGGTCACGGAGTACGGTATCGCCGCAGCGCATCAGTTTACCCTGGCTGACA CGCCGGTTTCTGTCGGTATCACGCCAAAGGTCCAGCGCGTGGATACCTGGAACTACAACGTTTCCGTCGGTAACTACAGC GCGTCAGATTTTCGCAGCGTCGACTGGAAGCGTTCCGAAAGCGGCGCAAACGTCGACGTCGGCTTTGCGGCTCAGCTGAC GCCAGAGTGGACAGTCGGACTGACCGGACAGAACCTTGTGGCGCGTAACATCAGTACGCGTGAAATCAACGGCATCACGG ACACGTTCCAGATCCGCCCGCAGGCGACTGCCGGCACGGCGTGGAGCAATGGTTTTGTCACACTGGCCACAGACGTTGAC CTGACACCGGCCAGCGGTTTTGCCTCGGATGAAAAAGTGCAGTATGCCGGCGTGGGTGCTGAGCTGAATGCATGGAACTG GGCGCAGCTGCGTGCCGGTTACCGCGCAGACATGCGCAACAGCGATCGCAGCATGTTTACCGCCGGTTTGGGGATTTCAC CCTTCAACGTCGTGCATCTCGACCTGACCGGCATGGCCGGCACTGACCGCAGCTATGGCGCTGCCGCGCAGCTTTCTTTC ACTTTCTGA Protein sequence : MMKAKLLTRSITLALLASAVPSVNAATTWTEARNDAMGGTGVASSGYLAAALANPALMTRHDAGDDVGLILPGVGAQISD PDNLRDGLDRVKSTFDDFRESAGTGNSSRQAAALKLALQDVDGDSGHASAGLSAVIAIPNDTLPFAFVARGWGQAKVRTE ITQRDLAYLDAAQSGIFSPTQTDIDQMTSRAQGVAALVTEYGIAAAHQFTLADTPVSVGITPKVQRVDTWNYNVSVGNYS ASDFRSVDWKRSESGANVDVGFAAQLTPEWTVGLTGQNLVARNISTREINGITDTFQIRPQATAGTAWSNGFVTLATDVD LTPASGFASDEKVQYAGVGAELNAWNWAQLRAGYRADMRNSDRSMFTAGLGISPFNVVHLDLTGMAGTDRSYGAAAQLSF TF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAK00459.1 | unknown | Not tested | SHI-1 | Protein | 1e-64 | 47 |
