Gene Information

Name : kdsD (PANA5342_3870)
Accession : YP_005197300.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : D-arabinose 5-phosphate isomerase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4088510 - 4089496 bp
Length : 987 bp
Strand : +
Note : -

DNA sequence :
ATGTCATATCAGCAACCAACGGTAAATTTTGATTTTCAGAAAGCCGGTAAAACGGTATTACGCATCGAGCGCGAAGGCCT
GGAGCAGCTTGATCAATATATTAATGAGGCTTTCGCCGACGCCTGCGCACTGATTTATGCCTGTCAGGGAAAAGTGGTGG
TCATGGGAATGGGCAAGTCGGGCCATATCGGGAAAAAAATGGCGGCCACCTTTGCCAGCACCGGCACGCCGGCGTTCTTT
GTGCATCCCGCTGAAGCCAGCCATGGCGATCTTGGCATGGTAGGTAAAGACGATGTCGTCATCGCGATATCTAACAGTGG
CGAATCCAGTGAGATTTTGGCACTGATACCGGTAATGAAACGCCAAAAGATTCCGTTGATCTGTATGACAAGCCGTCCTG
AAAGCGCCATGGCCCGCGCCGCAGATATCCACCTGTGCGTGAAAGTCCCACAGGAGGCCTGTCCGCTCGGCCTGGCCCCC
ACCACCAGCACAACCGCAACGCTGGTCATGGGCGATGCGCTGGCCGTTTCCCTGCTGGAAGCCCGCGGCTTTACGCCAGA
AGACTTTGCCTTGTCCCATCCGGGCGGTGCGCTGGGCCGGAAGCTGCTGCTACACGTCAGCGACATTATGCACAGCGGGG
ATGAACTCCCGCACGTCACTCGCGATGCTTCCCTGCGTGATGCCCTGCTGGAAATCACCCGTAAAAATCTTGGCCTGACG
GTTATCGTGGACGATCTGATGAAGATCGAGGGCATCTTTACCGATGGTGACCTGCGCCGCATCTTTGATATGGGCATTGA
TTTTCAACACGCCACTATCGCTGAAGTCATGACCCGGGGTGGCATTCGCGTGCGGCCTAACGTGCTGGCGGTGGATGCGC
TGAATTTGATGCAAACCAAAAACATTACTTCCCTGCTGGTGGCCGATGACGACCGTCTGTTGGGTGTGGTACATATGCAT
GACATGCTGCGCGCTGGCGTAGTGTAA

Protein sequence :
MSYQQPTVNFDFQKAGKTVLRIEREGLEQLDQYINEAFADACALIYACQGKVVVMGMGKSGHIGKKMAATFASTGTPAFF
VHPAEASHGDLGMVGKDDVVIAISNSGESSEILALIPVMKRQKIPLICMTSRPESAMARAADIHLCVKVPQEACPLGLAP
TTSTTATLVMGDALAVSLLEARGFTPEDFALSHPGGALGRKLLLHVSDIMHSGDELPHVTRDASLRDALLEITRKNLGLT
VIVDDLMKIEGIFTDGDLRRIFDMGIDFQHATIAEVMTRGGIRVRPNVLAVDALNLMQTKNITSLLVADDDRLLGVVHMH
DMLRAGVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsF AAZ04466.1 polysialic capsule transport protein Virulence PAI I APEC-O1 Protein 2e-47 42
kpsF CAE85210.1 KpsF protein Virulence PAI V 536 Protein 2e-47 42
kpsF YP_854329.1 polysialic acid capsule synthesis protein KpsF Not tested PAI I APEC-O1 Protein 4e-47 42