|
Name : hofB (PANA5342_3576) Accession : YP_005197006.1 Strain : Pantoea ananatis LMG 5342 Genome accession: NC_016816 Putative virulence/resistance : Virulence Product : protein transport protein HofB Function : - COG functional category : - COG ID : - EC number : - Position : 3741259 - 3742746 bp Length : 1488 bp Strand : + Note : - DNA sequence : ATGATGGCAGCATTCAGTGGCAGCGCACCTGTACCAGCGCTAATACCACGCTACGTGATAATTGTCAGGAGCAGTTCCGC TTTGCCGATCGGGGAGGTGCCTATGCCCACGTCTGATGATGCGATTGCGCTCATCTGCCAGCGCTTTCGGGCGATTGTCC TTGAGCACAGTGCGACACACTTGCGCCTTGCCGTTCCTGAAAGCGTCCCGGCGGGCCTGATGGAGGCATTACAGTTTGCC AGCCAGTGTCAGGCAGAGGTGGAGTGCTGGCCTCGTGCCCGGATAGAGCAGTTTGAATCGATGCGTAAACCTTTGGTGGC CAATGAAAAAGCTCCCGGCGAATCGACCATTGATACGGCCAGTCAGCTTTTGCGCCAGGCAACTCTGCGTCGTGCATCGG ATATTCATATCGAACCTTATCAGAGCACTCTGCGTATTCGCCTGCGGATTGACGGGGTCCTGCATCCTCTCCCCCTGCAG TTTGATACACAACCGGCTGCGCTGCTGGCACGACTGAAAATTCTGGCCGGTCTGGATATTGCCGAACGGCGCCTGCCTCA GGACGGACAGTTTAGTTGTGACATTGACGGAAAATCGGCCTCTTTTCGGCTCTCTACCCTGCCCGTTCAGGGCGGCGAAA AAGCCGTCGTTCGCCTACTTCAGAGTGAGGGCGCGGCCTTGTCGCTGGACAAGCTGGGATTACCCACCGCGCAGTTACGC CTTCTGACCGCCGCGCTCAGGCAGCCACAAGGGCTGATTTTGGTAACGGGCCCTACCGGGAGTGGCAAAACCTTCACGCT TTACAGTGGCCTGAGCGCGATCAACCAGCCTGATAAGAATGTCTGCAGCGTGGAAGATCCTGTTGAAATCCCTCTCCCCG GTATCAACCAGACCCAGATTAATCCAAAGTATGGCCTTGATTTTAATCGCGTGTTACGCGCCCTGTTACGTCAGGATCCG GACGTGATGATGGTCGGTGAAATACGTGACGGCGAGACAGCGGAGATTGCCGTTAAGGCAGCTCAGACCGGTCATCTGGT TCTCTCTACCCTGCATACTAACTCGACAGCGGAAACGCTGACGCGCTTGCGTCAAATGGGCATTCCCGGTTATCTGCTGG GTTCCGCACTTCGTCTGATCGTTGCCCAGCGGCTGGTCAGGCGTTTGTGCCCTCACTGCCGTAAGCCAGCACAGGCTGTT GCCCACTTTCCCGCCTCACTTTGGCCCGGAACGTTACAAACCTGGCGGGCGCCGGGCTGCGATCACTGCTTCTCCGGTTA TTTTGGTCGGATGGCCTTGTTTGAATTACTGCCCATAACGGCTAAGTTACAAAACGCCATTGCCGCCGAAATGCCACTTG AGGGCTTGCTGAGTCTGGCAAAACAGCAGGGCATGCGCACCCTGCTGGCGTCGGGTCTTGAAGCCGTCAGCCGTGGGGAT ACCTCCCTGGAAGAAATGCAGCGCGTTGTCGGACTGGATAATGACTAG Protein sequence : MMAAFSGSAPVPALIPRYVIIVRSSSALPIGEVPMPTSDDAIALICQRFRAIVLEHSATHLRLAVPESVPAGLMEALQFA SQCQAEVECWPRARIEQFESMRKPLVANEKAPGESTIDTASQLLRQATLRRASDIHIEPYQSTLRIRLRIDGVLHPLPLQ FDTQPAALLARLKILAGLDIAERRLPQDGQFSCDIDGKSASFRLSTLPVQGGEKAVVRLLQSEGAALSLDKLGLPTAQLR LLTAALRQPQGLILVTGPTGSGKTFTLYSGLSAINQPDKNVCSVEDPVEIPLPGINQTQINPKYGLDFNRVLRALLRQDP DVMMVGEIRDGETAEIAVKAAQTGHLVLSTLHTNSTAETLTRLRQMGIPGYLLGSALRLIVAQRLVRRLCPHCRKPAQAV AHFPASLWPGTLQTWRAPGCDHCFSGYFGRMALFELLPITAKLQNAIAAEMPLEGLLSLAKQQGMRTLLASGLEAVSRGD TSLEEMQRVVGLDND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-64 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-64 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_005197006.1 | protein transport protein HofB | VFG2426 | Protein | 2e-75 | 49 |
| hofB | YP_005197006.1 | protein transport protein HofB | VFG2048 | Protein | 5e-66 | 45 |
| hofB | YP_005197006.1 | protein transport protein HofB | VFG0182 | Protein | 6e-65 | 45 |
| hofB | YP_005197006.1 | protein transport protein HofB | VFG1876 | Protein | 2e-67 | 44 |
