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Name : ldcC (PANA5342_3498) Accession : YP_005196928.1 Strain : Pantoea ananatis LMG 5342 Genome accession: NC_016816 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : - COG ID : - EC number : - Position : 3649812 - 3651986 bp Length : 2175 bp Strand : - Note : - DNA sequence : ATGCCTCAACAATCAGGGAGATGTGCATTGAATATTCTGGCGATCATGGGCGCGCATGGCGTGTTTTACAAAGATGAACC CTTGCGCGAACTGGAAGTCGCGCTGAGTCAGCAAGGTTTTCAACTCATCCGGCCGAAAAACAATGACGATCTGCTAAAAC TCATTGAACACAATCCCCGTATCAGCGGCGTCATTTTTGACTGGGATGAACACAACAGCCCGGAGCTGTGTGGTGAAATC AATCAGCTTAATGAATACCTGCCGCTGTATGCCTTTATCAATACCCATTCCCAGATGGATATCAGTATCAATGAAATGCG TATGCCGCTGCATTTCTTTGAATATGCGCTGAATGCCGCCGACGATATTGCTCTTCACATCCGACAGTACACAGATGACT ACCTCGACAACATCACGCCGCCGTTGACCAAAGCGTTGTTTACCTATGTGAAAGAGGGGAAATACACCTTCTGTACCCCA GGCCATATGGCCGGTACGGCCTTCCAGAAAAGCCCGGTCGGCTGCTTGTTCTATGACTTTTTTGGTGCCAATACGCTGAA GTCGGATATCTCGATTTCGGTAACGGAACTGGGATCGCTGCTGGACCACACAGGGCCGCATCTGGAAGCCGAGGAGTATA TCGCCCGCACTTTTGGGGCGGAACAGAGCTACATGGTGACCAACGGCACCTCGACCTCGAATAAAATCGTCGGAATGTAT GCTGCCCCGGCAGGCAGCACGATTCTGGTGGACCGCAACTGCCATAAGTCGCTCACGCATCTGTTGATGATGAGCGATTT GATCCCCATCTGGCTCAAGCCAACACGCAACGCATTGGGTATTTTGGGCGGTATTCCGCAAAAAGAGTTCACCCGTGCCA GCATCGAGCAAAAAGTGGCGGTCACGCCGCGCGCCAGTTGGCCGGTACATGCGGTGATTACCAATTCGACCTACGACGGT TTGCTCTACAACACTCAGTACATCAAGCAAACCCTTGAGGTGCCGTCGATCCACTTTGATTCTGCCTGGGTTCCCTATAC CAACTTTCATCCCATCTATGAGGGGAAAAGCGGCATGAGCGGTGAGCGGGTGCCGGGTAAAGTCTTCTATGAAACGCAGT CCACCCATAAACTGCTGGCGGCTTTTTCCCAGGCTTCGCTGATTCATATTAAAGGCGACTATGACGAGCAGACGTTTAAT GAAGCCTACATGATGCACACCACCACCTCACCGAACTATGCCATCGTCTCATCCATTGAGACAGCGGCGGCGATGCTGCG GGGAAATCCGGGCAAAAGGCTCATTAACCGGTCAGTGGAACGCGCCCTGCATTTCCGTCGTGAGATACAGCGGTTGCGAG AAGAGTGCGACAGCTGGTTTTTTGATATCTGGCAGCCTGAACACGTTGATGAAGCCCAGTGCTGGCCGATACAGCCGGGG GAAGAGGACTGGCACGGATTCACCCAGGCCGATCGCGACCACATGTATCTTGATCCGATCAAGGTAACGATCCTGACACC CGGCATGAGCGAGCTGGGCGTGATGGCGGAAGAGGGCATTCCGGCGGCGCTGGTGGCGAAGTTCCTGGATGAGCGCGGCA TCGTGGTTGAAAAAACCGGCCCTTACAATCTGTTATTCCTGTTTAGTATCGGCATTGATAAAACCAAAGCGATGAGCGTG CTGCGAGGGTTAACGGAATTTAAGCGCGCCTACGATCTCAATCTCCGGGTCAAAAATATGTTGCCGGATCTCTATGCGGA GGATCCCGATTTTTATCGCAACATGCGTATTCAGACGCTGGCGCAGGGGATCCACCGTCTTATCCAGCAACATGATTTAC CGCAGCTCATGTTGAAGGCGTTTGACGTGTTGCCCGAGATGAAAATGACGCCGCATCAGGCTTTTCAGCAACAGGTGAAG GGCAATATTGAAACCGTGAACATCAATGAGCTGGTGGGCCGCATCTCTGCCAACATGATCCTGCCTTATCCTCCGGGCGT TCCTCTGGTGATGCCTGGTGAAATGATCACAGAACAAAGCCGCGCCGTACTCGACTTCCTGTTAATGCTGTGTAGCATTG GACGCCACTATCCTGGCTTTGAGACGGATATTCACGGCGCGATCCTCACCGAAGAGGGGGAATATCGGGTACGTGTGCTG AAACAGGCCGGCTAA Protein sequence : MPQQSGRCALNILAIMGAHGVFYKDEPLRELEVALSQQGFQLIRPKNNDDLLKLIEHNPRISGVIFDWDEHNSPELCGEI NQLNEYLPLYAFINTHSQMDISINEMRMPLHFFEYALNAADDIALHIRQYTDDYLDNITPPLTKALFTYVKEGKYTFCTP GHMAGTAFQKSPVGCLFYDFFGANTLKSDISISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMY AAPAGSTILVDRNCHKSLTHLLMMSDLIPIWLKPTRNALGILGGIPQKEFTRASIEQKVAVTPRASWPVHAVITNSTYDG LLYNTQYIKQTLEVPSIHFDSAWVPYTNFHPIYEGKSGMSGERVPGKVFYETQSTHKLLAAFSQASLIHIKGDYDEQTFN EAYMMHTTTSPNYAIVSSIETAAAMLRGNPGKRLINRSVERALHFRREIQRLREECDSWFFDIWQPEHVDEAQCWPIQPG EEDWHGFTQADRDHMYLDPIKVTILTPGMSELGVMAEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMSV LRGLTEFKRAYDLNLRVKNMLPDLYAEDPDFYRNMRIQTLAQGIHRLIQQHDLPQLMLKAFDVLPEMKMTPHQAFQQQVK GNIETVNINELVGRISANMILPYPPGVPLVMPGEMITEQSRAVLDFLLMLCSIGRHYPGFETDIHGAILTEEGEYRVRVL KQAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 72 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ldcC | YP_005196928.1 | lysine decarboxylase | VFG1670 | Protein | 0.0 | 65 |
