|
Name : PANA5342_3208 (PANA5342_3208) Accession : YP_005196638.1 Strain : Pantoea ananatis LMG 5342 Genome accession: NC_016816 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 3348483 - 3350972 bp Length : 2490 bp Strand : - Note : - DNA sequence : ATGGGTAAATCACTGTTATTACCACGTAAAAAACTTGGGGTATGCATTCTTTTGGCTTTGTCAGGCTGTGTTTTTCCAGC ATATTCTGTCGAGTTTAATATGGATATCCTTGATGCTGAAGATCGTAGTAATATTGATTTATCACATTTTTCCGAAGCCG GTTATATCATGCCGGGGGAATATTTACTTACGCTTAAAATAAATGGTAGCACTGTCAGCGATCAGGGTATTTCATTTAAA GAAACTGCTTTTCAGAAAGATGAAAAATCACATATACGCGCTTGTCTTAATCGTGAACAGGTTGATATGTTGGGATTACG TCCGGAGGCATTAGCCAAAGTTATTTTTAATGAAGAAGGGAGTTGCGCAAACTTTGATGGTCTTGAAGGCGTAGTATTAA AAGGCGATCTGGCGCAATCAACATTGGAAGTCTCCGTTCCACAGGCATGGCTGGAATACCAGGATGCTACCTGGCTTCCG CCTTCTCGCTGGGAAAACGGCATAGCTGGTGTAATGCTAGACTACAGCTTAAATGGCACAGTAACAAAAAACACGCAGGG AGCGCGCTCGCAAAATGCCAGTGGAAGTGGCACTGCTGGCGTCAACATAGGGGCATGGCGTTTTCGAGGGGACTGGCAGG GTAACTACAATCAAAGTGGAGGGCACAGCGCATCATCCGCACGAAGCTTTAGTTGGGGGCGCTTTTACGCCTATCGCGCG TTACCCTCTGTCATGGCGAAATTGACGCTGGGTGAAGATTATCTTTCCTCCGATTTGTTCGATTCCTGGCGCTACACTGG TGCCTCATTAATTAGTGATGAAAGTCAACTGCCGCCTAAATTGCGAGGCTATGCGCCGGAGGTCACCGGTATCGCGCGTA CCAATGCAAAAGTCACTATCAGCCAGCAAGGTCGGGTTATTTATGAAACGACCGTGGCGGCTGGTCCGTTCAGGATTCAA GAGTTAAACAGCGCGGTGAGTGGTGAACTGGATGTAGCCGTCGCCGAGCAGGATGGCAGTACTCAGCATTTTCAGGTAAC CACTGCGACTATTCCTTATCTTACCAGGCCAGGACAAATACGCTATAAGTTTGCCACCGGACGTTCCTCAAATTATAGCC ATAATCTGGAAGGCCCTTTATTTGGCACAGCAGAAGCATCATGGGGTATAAGCAACAGTTGGTCATTATATGGTGGGGGC ATTTTTTCACCCGATTATAAAAGTATGGCTGTGGGATTGGGCCGCGACTTGTTTCAACTGGGCGCGCTCTCGGCAGATAT CACCCAGTCTATGGCGAACTTACCAGGTGAAGCCAAATTACAGGGTCGCTCCTATCGTGTCAGTTATTCCAAACGCTTCG ATTCAATCAACAGTGACATTACTTTTGCAGGCTATCGTTTTTCCGAGCGGAATTATATGACTATGCCCGAATATCTCGAC AGCCGCTATCACGGCAGTACACGGGGTAACAGCAAAGAACTTTATACCGTTACTGCCAGTAAAAATTTTGCCGAACTCCG TTTATCGGCCTATCTAAGCTGGTCGCATCAGACTTACTGGAATAAGCCTGAAACGGATCGCTATAGTTTGTCACTGAGTC GTTATTTTGATGCAGGAGACTGGCATAATATCTCCGCATCGCTTTCAGCATCGCGAAGTGATTATAACGGTAAAAAGGAT GACGCTCTGTGGCTCAGTATGAGTATGCCTCTGGGCTCTGGAACAGCAAGTTATAATGGTAACTATGGTGGTAAAGCATT CAGCCAGACTGCGGGATGGTACCAAACCTTGGAAAATGGTGACAGCTATCGTATGACTGCAGGAACCCGTAGTAATAAGA ATGGTAGTAATACCACCACGCAAGCCAGCGGGATGTATAACCATAACGGAGATCATGCTGATGTGACAGCAACTCTGAGC TGGCAAGAAAAAAGTTATACTTCTGCCAGTTTTTCACTCAGTGGTGGTATGACCGCCACGAAGGAAGGCGCAGCACTTCA TGGGGCCAGCAATCGTGGCGGAACGCGGATGATGATCAGCACTGACGGCGTAGCGGATGTACCTATTGGACGCGACGGTA ACACCAATATCTTTGGTATTGCAGTGATGCCTTCAGTGCCGAGCTATTACCGTTCTTCTGTAAGCGTAGATGTTAACCGT CTGCCAGATGATGTTGAAATGAGTGACTCACCCGTAGTGGAAGCTGCGCTGACTGAAGGGGCAATAGGTTATCGTCATAT TGGTGTGCTGAAAGGGGCTAAAGTTGTTGCTATTCTGCGTATGGCTAACGGTGAGCATCCGCCATTTGGTGCCACCATTT TTAATGAGAAAAAACGTGAAGTTGGAATGGTAAGTGACGGTGGTTTAGCTTGGATCACGGGTATTAATCCGGACGAGAAA ATCACCCTGCAATGGAACGGGAAAATACAGTGTAAGGCGATATTGCCACATGTCATTCCCGCAAGTAAGTTGTTGTTGCC CTGCAAGTAA Protein sequence : MGKSLLLPRKKLGVCILLALSGCVFPAYSVEFNMDILDAEDRSNIDLSHFSEAGYIMPGEYLLTLKINGSTVSDQGISFK ETAFQKDEKSHIRACLNREQVDMLGLRPEALAKVIFNEEGSCANFDGLEGVVLKGDLAQSTLEVSVPQAWLEYQDATWLP PSRWENGIAGVMLDYSLNGTVTKNTQGARSQNASGSGTAGVNIGAWRFRGDWQGNYNQSGGHSASSARSFSWGRFYAYRA LPSVMAKLTLGEDYLSSDLFDSWRYTGASLISDESQLPPKLRGYAPEVTGIARTNAKVTISQQGRVIYETTVAAGPFRIQ ELNSAVSGELDVAVAEQDGSTQHFQVTTATIPYLTRPGQIRYKFATGRSSNYSHNLEGPLFGTAEASWGISNSWSLYGGG IFSPDYKSMAVGLGRDLFQLGALSADITQSMANLPGEAKLQGRSYRVSYSKRFDSINSDITFAGYRFSERNYMTMPEYLD SRYHGSTRGNSKELYTVTASKNFAELRLSAYLSWSHQTYWNKPETDRYSLSLSRYFDAGDWHNISASLSASRSDYNGKKD DALWLSMSMPLGSGTASYNGNYGGKAFSQTAGWYQTLENGDSYRMTAGTRSNKNGSNTTTQASGMYNHNGDHADVTATLS WQEKSYTSASFSLSGGMTATKEGAALHGASNRGGTRMMISTDGVADVPIGRDGNTNIFGIAVMPSVPSYYRSSVSVDVNR LPDDVEMSDSPVVEAALTEGAIGYRHIGVLKGAKVVAILRMANGEHPPFGATIFNEKKREVGMVSDGGLAWITGINPDEK ITLQWNGKIQCKAILPHVIPASKLLLPCK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 53 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 0.0 | 51 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 0.0 | 51 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 0.0 | 51 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 0.0 | 51 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 0.0 | 51 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 0.0 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PANA5342_3208 | YP_005196638.1 | fimbrial biogenesis outer membrane usher protein | VFG1548 | Protein | 0.0 | 51 |
| PANA5342_3208 | YP_005196638.1 | fimbrial biogenesis outer membrane usher protein | VFG0884 | Protein | 0.0 | 51 |
| PANA5342_3208 | YP_005196638.1 | fimbrial biogenesis outer membrane usher protein | VFG0895 | Protein | 0.0 | 51 |
