Gene Information

Name : PANA5342_2359 (PANA5342_2359)
Accession : YP_005195789.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Resistance
Product : AraC family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2466972 - 2467319 bp
Length : 348 bp
Strand : -
Note : -

DNA sequence : 
ATGATGAGTAACGCTTTTATTCACGACCTGATTAGCTGGATCGATAACAATATCGAAGCACGTCTCGATCTCGATACCGT
TTCTGAGCGCGCTGGCTATTCAAAATGGCACCTGCAACGGATGTTTAAAGAGCACACCGGCTATCCACTGGGTGAATACA
TTCGCATGAAGAAGTTGAAAAAATCGGCCGACCGTTTGACCAGCACCAACGAGCCTATCCTGAATGTAGCGATATCGCTG
GGATTTGACTCGCAACAGTCTTTTAACCGCAGCTTTAAGCGTCAGTACGGTGTTGCCCCGGGTGCATGGCGCCGTCACAC
TGTGCCTTCGCAGTCAGCCATGCAGTAA

Protein sequence : 
MMSNAFIHDLISWIDNNIEARLDLDTVSERAGYSKWHLQRMFKEHTGYPLGEYIRMKKLKKSADRLTSTNEPILNVAISL
GFDSQQSFNRSFKRQYGVAPGAWRRHTVPSQSAMQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 9e-20 46
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 9e-20 46
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 5e-22 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator CP000647.1.gene1624. Protein 2e-26 53
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator CP001918.1.gene2033. Protein 2e-26 52
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator NC_002695.1.917339.p Protein 3e-25 50
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator CP001138.1.gene1637. Protein 4e-25 50
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator BAC0560 Protein 3e-25 50
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator CP000034.1.gene1596. Protein 2e-25 50
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator NC_010558.1.6276025. Protein 4e-20 46
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator BAC0371 Protein 4e-23 45
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator NC_002695.1.914293.p Protein 4e-23 45
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator CP001138.1.gene4488. Protein 2e-22 44
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator CP000034.1.gene4505. Protein 9e-23 44
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator CP001918.1.gene327.p Protein 1e-22 44
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator CP001138.1.gene612.p Protein 3e-21 42
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator CP000647.1.gene4499. Protein 9e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator VFG1038 Protein 4e-20 46
PANA5342_2359 YP_005195789.1 AraC family transcriptional regulator VFG0585 Protein 1e-22 44