Gene Information

Name : basR (PANA5342_1921)
Accession : YP_005195351.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2021137 - 2021823 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATATTGATTGTTGAAGACGATGCCCTGCTACTTCAGGGGCTGGTACTGGCACTGGAAGGTGCAGGCTACGTGTG
CGATGGTGTTTCAACGGTCCGCTCTGCCGAAGCCCACCTTGCCAGCGGACTTTACAGCCTGGTGGTGCTGGATATCGGCC
TGCCGGACGAAGACGGCCTGCATTTACTGCAACGCCTGCGTCGTCAAAAGCAGATGCAGCCCGTTTTAATCCTGACCGCA
CGCGATACCATTGAAGAGCGCATAGCCGGACTCGATGCCGGCGCTGATGACTATTTGATTAAGCCTTTTGCGCTGGATGA
GTTGCTGGCACGGATTCGCGCGCTGATCAGGCGTCACGTTAACCAGGGCGATTCCCGCCTCGAAGTGGGTAATCTGTCAC
TGGATATGACCCACCGCCAGATTCATCTGGATGACGTGCTGCTCGACCTGACGCCCAAAGAGTTTTCCATTCTGTCCCGG
TTGATGTTGAAAGCAGGCCATCCGGTTCACCGTGAGTTGCTGTATCAGGACATCTACAACTTTGATAATGAGCCCTCCAC
CAATACGCTGGAAGTCCATATTCATAACCTGCGCGACAAGGTGGGCAAAGCCACGATCCGAACGGTTCGCGGTTTTGGCT
ATGCCTTATCTCAGCCGCGCGCAGAAAACGAGTCATCACCCGAATGA

Protein sequence : 
MKILIVEDDALLLQGLVLALEGAGYVCDGVSTVRSAEAHLASGLYSLVVLDIGLPDEDGLHLLQRLRRQKQMQPVLILTA
RDTIEERIAGLDAGADDYLIKPFALDELLARIRALIRRHVNQGDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSR
LMLKAGHPVHRELLYQDIYNFDNEPSTNTLEVHIHNLRDKVGKATIRTVRGFGYALSQPRAENESSPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 6e-24 43
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-24 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_005195351.1 winged helix family two component transcriptional regulator BAC0487 Protein 3e-51 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_005195351.1 winged helix family two component transcriptional regulator VFG0473 Protein 5e-58 73
basR YP_005195351.1 winged helix family two component transcriptional regulator VFG0596 Protein 3e-24 42