Gene Information

Name : PANA5342_1728 (PANA5342_1728)
Accession : YP_005195158.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : type VI secretion system, core protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1828595 - 1829125 bp
Length : 531 bp
Strand : +
Note : -

DNA sequence : 
ATGCCAACAATGAAGTCCAGTGGGCAGAAATTTATCGCCCGCAATCGCGCGCCACGCGTTCAGATTGAATATGACGTGGA
AGTCTATGGCGCAGAACGTAAAATTCAGCTGCCATTCATCATGGGTGTTCTGGCCGATTTAGCCGGTAAACCGCTGGAGC
CGCAGGCCAGCGTTGACGACCGTAAATTCATGGAAATCGACATCGACAATTTCGATGAGCGTATGAAAGCCATGAAGCCA
CGTGCGGCATTCCAGGTAGACAATACGTTGAACGGTGACGGCAAACTGAACATCGATCTGACCTTCGAAAGCATGGACGA
TTTTTCTCCTGATGCCATTGCACGCAAAGTCGATCCACTCAACAGCCTGCTTGAAGCACGTACCCAGCTCTCCAACCTGC
TGACCTATATGGACGGCAAAAACGGCGCCGAAGAGCTGATCGGCAAGATTTTACAGGATCCGACACTGCTGCAGGCCCTG
TCACACGTGCCTAAGCAAACGGATGCCCCTGAAGGTAAGGAGGAGCAGTAA

Protein sequence : 
MPTMKSSGQKFIARNRAPRVQIEYDVEVYGAERKIQLPFIMGVLADLAGKPLEPQASVDDRKFMEIDIDNFDERMKAMKP
RAAFQVDNTLNGDGKLNIDLTFESMDDFSPDAIARKVDPLNSLLEARTQLSNLLTYMDGKNGAEELIGKILQDPTLLQAL
SHVPKQTDAPEGKEEQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0297 NP_454879.1 conserved hypothetical protein Not tested SPI-6 Protein 5e-58 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PANA5342_1728 YP_005195158.1 type VI secretion system, core protein VFG2069 Protein 2e-60 75