Gene Information

Name : hcp3 (PANA5342_1640)
Accession : YP_005195070.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : type VI secretion system effector
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1737437 - 1737919 bp
Length : 483 bp
Strand : +
Note : -

DNA sequence :

ATGGCTATTGATATCTTTTTGAAAATAGATGGAATTGAAGGTGAGTCGCAAAATGCAAACCATAAAAAATGGATAGATGT
TCTGTCATTTAACTGGGGCGCGCAGCAACCAGGTAATATGTCCGTTGGCGGTGGTGGCGGTGCGGGAAAAGTGAATTATC
GCGATTTAAGCGTTGAGGCATTGATCGATAAGGCCACACCGGCGTTAGTGAAATATTGTGCAAGTGGTAAACATCTGCCA
AAAATTCAGCTGTCTGTTTGCAAGGCAGGCGGGCAGGAAGTGGAATATACTCGCATCACGCTTGAAGATGTGCTGGTTAC
GCAGACTGACTTTACCGGCATTGGTCACGCGTCCACGCTGGGTATGCAGTATTCCTTTCAAGCCAGCAAGGTTGCGCTGG
AATACTGGGAACAGGCTTCTCAGGGAACGAAAGCCGCTTCTGTGCAGATGGGTTGGGATATCAAGCAAAATAAAGAAAGC
TAA

Protein sequence :

MAIDIFLKIDGIEGESQNANHKKWIDVLSFNWGAQQPGNMSVGGGGGAGKVNYRDLSVEALIDKATPALVKYCASGKHLP
KIQLSVCKAGGQEVEYTRITLEDVLVTQTDFTGIGHASTLGMQYSFQASKVALEYWEQASQGTKAASVQMGWDIKQNKES

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0302	NP_454882.1	conserved hypothetical protein	Not tested	SPI-6	Protein	8e-22	44

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
hcp3	YP_005195070.1	type VI secretion system effector	VFG2071	Protein	4e-19	45