Gene Information

Name : int5 (PANA5342_1494)
Accession : YP_005194924.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Unknown
Product : site-specific recombinase, phage integrase family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1571573 - 1572805 bp
Length : 1233 bp
Strand : -
Note : -

DNA sequence : 
ATGGCAAGACAGACCAAGCCCCTAAACAACACAGAAGTGAAGAACGCAAAAGCTACTGAACGTGCATTAGTTCTCTACGA
TGGAGATGGTCTGGAATTGCAGGTTACTCCCGGAGGCTCGAAGCTCTGGCGTTTCCGTTACTACAAACCTTACACTCGCA
AAAGAGCCATGATTAGCTTCGGTTCTTACCCTTCCGTCACACTATCCGAAGCCCGACAGAATCGTGAGGTAGCTCGTTCC
CTTTTGAGCAAAGACATCGATCCACAGCAGCATAAAAAGTCAGAGCAGCTTCGTCAAAAGAGTGTGAGTGAAAGCACATT
TGAAAAAGTTGCAGCGGAATGGTTTAAGACGAAAGAAGCTGCGGGTTTAGCAACTCACACTCTCAATGATATCTGGCGTT
CGTTGAGTAAGTATGTGTTCCCACATATTGGCTCTATGCCCATTTCCAGCATTACTGCCCAACAATTCATTGCTGCTCTT
GAACCTACACATGCAGCAGGCAGGCTGGAAACAGTAAAACGGCTTACACAACGTATCAACGAAGTCATGGATTTCGCTCT
GAACTCTGGTTTAGTCAGTTCAAACCCAGCAGCGCGAATTAGTAGAACATTCCATAAACCTAAAGTTAAACATCGCCCTG
CCCTCCTACCTGAACAACTTCCCTTTCTGATGAAGACCCTCGCATTTGCCAGCATTGGCAGACAAACACGTTGCCTCATC
GAGTGGCAGCTACTGACTATGACAAGGCCAGCAGAAGCAGCAATGACCCGCTGGGATGAGATTAACTTTGAGACCAAGGA
ATGGCGCATTCCGGCTGGCAGAATGAAAATGAAACGGGAACACGTCATTCCGTTGTCAGATCAGGCACTTGGTGTATTAG
ATGTCATGAAGCCAATTAGTCAGCATAGAGATTTTGTTTTCCCCGGTTATCGAAACCCGCTTGAACCGATGAACAGTCAG
ACTGCTAACATGGCGCTGAAACGAATGGGGTTCAAAGACCTGTTAGTAGCTCATGGTATGAGATCAATTGCCTCAACTAT
CCTTAATGAGAAAGGTTTTCCACCTGACGTGATTGAAGCAGCTTTGGCTCACATTGACACTAATGAAGTCAGAAGAGCTT
ATAACCGTGCCCAATACTTGGAACAACGTAGAGAGATGATGACTTGGTGGGGAGAGCATGTTGAAGAAAAATCATACGGA
ATCATGTGTGTTCAATCATTAAAGGTTTTATAG

Protein sequence : 
MARQTKPLNNTEVKNAKATERALVLYDGDGLELQVTPGGSKLWRFRYYKPYTRKRAMISFGSYPSVTLSEARQNREVARS
LLSKDIDPQQHKKSEQLRQKSVSESTFEKVAAEWFKTKEAAGLATHTLNDIWRSLSKYVFPHIGSMPISSITAQQFIAAL
EPTHAAGRLETVKRLTQRINEVMDFALNSGLVSSNPAARISRTFHKPKVKHRPALLPEQLPFLMKTLAFASIGRQTRCLI
EWQLLTMTRPAEAAMTRWDEINFETKEWRIPAGRMKMKREHVIPLSDQALGVLDVMKPISQHRDFVFPGYRNPLEPMNSQ
TANMALKRMGFKDLLVAHGMRSIASTILNEKGFPPDVIEAALAHIDTNEVRRAYNRAQYLEQRREMMTWWGEHVEEKSYG
IMCVQSLKVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20773.1 integrase Not tested VPI Protein 2e-112 55
int AAK20803.1 integrase Not tested VPI Protein 2e-112 55
unnamed AAA82714.1 integrase Not tested VPI Protein 2e-112 55
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 3e-112 55
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 3e-112 55
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 6e-105 51
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 1e-92 49
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 4e-92 49
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 4e-92 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
int5 YP_005194924.1 site-specific recombinase, phage integrase family VFG1092 Protein 2e-92 49