Gene Information

Name : PANA5342_1329 (PANA5342_1329)
Accession : YP_005194759.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1381340 - 1382089 bp
Length : 750 bp
Strand : +
Note : -

DNA sequence : 
ATGATGAAAAGACGCAAGGATAGGTGGGCATTACTGTTGATAACGAGTGTGCTGGCGACGTTGGCAGGGCAAACAGCGCA
GGCCGCCATTGCCCTTGACCGCACGCGCGCCATTTTTAACGGAGGCGAAAAAAATCTCATCCTGAATATCAGCAACGACA
ATCAGAAAGAGCCCTATCTGGCTCAGGCCTGGCTGGAAGATGCACAGGGCAATAAGCTCACCAACTATCTCAGGGTCACG
CCGCCCGTGCAGCGCGTGGAGCCGGGCGCAAAGAGCGTCATTCGCATTACCGCGTTGCCCTCTTCCGCCTCGCTGCCGCA
GGACAGGGAAAGTGTGTTTTATTTCAGCGTCCGGGAAATTCCGCCGCGCAGCGACCGCGCCAACGTGTTGCAACTGGCCC
TGCAGACCCGAATCAAACTGTTCTATCGACCAGCCAGCATAACCCCTGAGCGCTTCAGCCGCCATGATGATCAGTTAGTC
CTGCACAAAGTGAAAGGCGGTTTCCGCGTGGAGAACCCAACACCTTATTACATGACGTTGCTGGGGATCATCAGTAAAGG
CAACCGTGCTGTTGAGAAAAGCTTTGTGCCCGTCATGATCGCCCCGATGTCGAGCGAGACGGTGAAGTCCTCGGTTTCCC
GCGATCCGCAAATTATCACCATTAATGATTTTGGTGGAAAACCTGTTCTGCCCTTTCTCTGCCAGGGCTCGGTATGTCGG
GCCAATCCCGTGGCCGTCACTCAGCACTGA

Protein sequence : 
MMKRRKDRWALLLITSVLATLAGQTAQAAIALDRTRAIFNGGEKNLILNISNDNQKEPYLAQAWLEDAQGNKLTNYLRVT
PPVQRVEPGAKSVIRITALPSSASLPQDRESVFYFSVREIPPRSDRANVLQLALQTRIKLFYRPASITPERFSRHDDQLV
LHKVKGGFRVENPTPYYMTLLGIISKGNRAVEKSFVPVMIAPMSSETVKSSVSRDPQIITINDFGGKPVLPFLCQGSVCR
ANPVAVTQH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 3e-56 58
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 9e-57 56
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 9e-57 56
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 7e-57 56
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 5e-51 55
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 1e-56 55
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 1e-56 55
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 1e-56 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PANA5342_1329 YP_005194759.1 fimbrial chaperone protein VFG1547 Protein 5e-57 56
PANA5342_1329 YP_005194759.1 fimbrial chaperone protein VFG0885 Protein 2e-51 55
PANA5342_1329 YP_005194759.1 fimbrial chaperone protein VFG0896 Protein 6e-57 55