Gene Information

Name : rbsK3 (PANA5342_1252)
Accession : YP_005194682.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : ribokinase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1304859 - 1305818 bp
Length : 960 bp
Strand : -
Note : -

DNA sequence :
ATGAAAGGCAAAGTGTGCGTGTTCGGTTCCTTCAACCTGGATATCGTGGCAGGCATGGCCCGCTTTCCGCTACCGGGTGA
ATCATTAATTGCCCAGCACAGCATGATGGGGCCCGGCGGCAAAGGCGCGAATCAGGCCACCGCCGCGCTTCGTGCGGGCG
CCCGGGTGCACTACATCGGCAAAGTGGGCAACGACGACTTCGGCATATTTGCCCGCCGGCATCTGGAAAAAACCGGCTTT
GATGCCATTACGCTGTTCACCTGCAAAGAGAAACCCACCGGCAATGCGTTGATTTACGTGGCCGGTAATGACGCTGAGAA
TATGATTTCTGTTTATCCTGGGGCGAATCTCACCGTCAGCGCAGCGGAAGTGACGCGCTGCAGGCCGACCGTTGCCGCGG
CGGATATTTTGCTGGTACAGCTGGAAAATAATCTGAGCGCGATTCAGCGCATGATCGATCATGCCCGGGCGGCAAATACC
TTTGTCATCCTTAATCCGGCACCGTTTCAAAAAATCAGTGACGCTCTGCTGGCAAAGGTCGATCTGCTGACGCCCAACAG
CACCGAAGCCATGCTGCTGACCGGCGTGAAGGTCACGGACCTCGCCAGCGCCCGGCAGGCCGCCCTTGTGCTGCACCGCA
AGGGCGCACGTCAGGTAATTATTACCCTGGGTACGGCGGGCGCCTTACTGTCTGACGGGCAACAGCTGCTGCATATTCCG
GTGTTTCCCGCCACGCCGCTTGATACAACCGGCGCGGGCGATGCCTTTAACGGTGCGCTGGCTGCCCGGCTGGCCGCCGG
CGTTTCTCTGGAACAGGCTGCACTGTTCGCCGCAGCGTTTGCCTCCCTGTGCGTTGAACGACAGGGAGCCGCTCATGCTA
TGCCCGCTTATGCCGATGCACTGGCACGCCTGCAGGCGCATCCGGAATGCGTGGCCGAAAGCGTGCTGGCCTGCGCGTAA

Protein sequence :
MKGKVCVFGSFNLDIVAGMARFPLPGESLIAQHSMMGPGGKGANQATAALRAGARVHYIGKVGNDDFGIFARRHLEKTGF
DAITLFTCKEKPTGNALIYVAGNDAENMISVYPGANLTVSAAEVTRCRPTVAAADILLVQLENNLSAIQRMIDHARAANT
FVILNPAPFQKISDALLAKVDLLTPNSTEAMLLTGVKVTDLASARQAALVLHRKGARQVIITLGTAGALLSDGQQLLHIP
VFPATPLDTTGAGDAFNGALAARLAAGVSLEQAALFAAAFASLCVERQGAAHAMPAYADALARLQAHPECVAESVLACA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1076 YP_853096.1 carbohydrate kinase Not tested PAI IV APEC-O1 Protein 8e-49 46
orf408 NP_460347.1 regulatory protein Not tested SPI-2 Protein 5e-49 44
rbsk YP_216390.1 DeoR family transcriptional regulator Not tested SPI-2 Protein 2e-49 44
ORF 408 CAB37417.1 - Not tested SPI-2 Protein 4e-49 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rbsK3 YP_005194682.1 ribokinase VFG0483 Protein 2e-49 44