Gene Information

Name : int3 (PANA5342_1130)
Accession : YP_005194560.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Unknown
Product : prophage CP4-57 integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1170195 - 1171436 bp
Length : 1242 bp
Strand : -
Note : -

DNA sequence : 
ATGGCACGAAAAACCAAGCCGTTAACCGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTATATGA
TGGTGATGGGCTTACTCTGTTAATCAAGTCCAGCGGTAGTAAGCTCTGGCAGTTCCGTTACTATCGACCTTTGACAAAAC
AGCGAACCAAGCAAAGCTTCGGAGCCTACCCTGCTGTCTCACTTTCTGATGCGCGTAAACTCAGAGCTGAATCTCGAGTT
TTGTTGGCGAAAGACATTGATCCTCAGCAACATCAGAAAGAACAGGTTAGAAATTCGCAAGAAGCTAAAACCAACACTTT
CCTGTTAGTTGCCGAGCGTTGGTGGAATGTGAAGAAAGCCAGCGTAACAGAGGACTATGCCTACGATATCTGGCGCTCGC
TTGAGAGAGATGTTTTCCCAGCAATCGGTGATATCAGTGTCACTGAGATTAAGGCTCATACCCTGGTTAAAGCAGTTCAG
CCAGTTCAGGCCAGAGGGGCATTAGAGACTGTTCGACGCCTTTGTCAGCGAATTAATGAAGTCATGATTTATGCGCAGAA
CACGGGCCTGATTGATGCGGTTCCCAGCGTAAACATCGGGAAAGCATTCGAGAAACCGCAGAAGAAAAATATGCCGAGTA
TCCGCCCGGATCAACTTCCACAGTTAATGCAAACAATGCGTACAGCAAGTATCAGTGTGTCCACGCGGTGTCTGTTCATG
TGGCAGCTTCTCACCATCACCCGTCCTGCCGAAGCTGCTGAGGCTAGATGGGATGAGATCGATTTTGTTGCTAGCGAATG
GAAAATTCCAGCAGCCCGAATGAAGATGAACCGGGACCATACTGTTCCACTATCCAATGAAGCTCTCTCTATTCTGGAAA
TGATGAAGTCACTCAGTGGTGGCCGAGAGTTTATATTTCCCAGTCGCATTAAGCCTACCCAGCCGATGAACAGCCAGACT
GTGAATGCAGCCCTTAAGCGTGCTGGCTTAGGAGGTGTCCTCGTATCACACGGTTTACGTTCTATCGCCAGTACTGCACT
CAATGAGGAAGGATTTCCACCCGATGTTATTGAGGCAGCGCTTGCCCATGTGGATAAAAATGAGGTACGTCGAGCTTACA
ACCGCAGTGATTACCTCGAGCAACGTCGTCCGATGATGCAATGGTGGGCTGAATTCGTAAACAAAGCAGACAGCGGGAGC
ATTGTTGATAACGGGAAAAGAGAGTTAAAACTTGTAGTCTGA

Protein sequence : 
MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESRV
LLAKDIDPQQHQKEQVRNSQEAKTNTFLLVAERWWNVKKASVTEDYAYDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQ
PVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISVSTRCLFM
WQLLTITRPAEAAEARWDEIDFVASEWKIPAARMKMNRDHTVPLSNEALSILEMMKSLSGGREFIFPSRIKPTQPMNSQT
VNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWAEFVNKADSGS
IVDNGKRELKLVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20773.1 integrase Not tested VPI Protein 6e-109 54
int AAK20803.1 integrase Not tested VPI Protein 6e-109 54
unnamed AAA82714.1 integrase Not tested VPI Protein 6e-109 54
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 8e-109 54
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 8e-109 54
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 4e-106 50
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-85 47
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 5e-85 47
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 5e-85 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
int3 YP_005194560.1 prophage CP4-57 integrase VFG1092 Protein 2e-85 47