Gene Information

Name : PANA5342_1119 (PANA5342_1119)
Accession : YP_005194549.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : GTPase family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1154242 - 1155117 bp
Length : 876 bp
Strand : -
Note : -

DNA sequence :
ATGCAAAAGTTGGACGGCCTTAAGGCCTTTGAGCAACCCCTGGCTTCACTGCCGCACCCGCTTCGAAAACTTATCCTTGC
ACGTCTTCGCAGTCTTACGCAGTACGAGCCGGTAATCGGTATCATGGGTAAAACTGGAGTGGGGAAGTCGTCGCTCTGTA
ATGCCCTGTTCCAGGGCGAAGTCACACCGGTCAGCGATGTGAAAGCCTGCACACGTGATGTGCTGCGCTTTCGGCTCTGC
AATGGCAATCACAGTCTGATGGTTGTTGATTTACCTGGTGTGGGCGAAAGCGAGCAACGCGACGAGGAATATACAGCACT
GTATCGTCACATCCTGCCGGAACTGGATTTAGTGCTGTGGGTTATCAAAACCGATGACCGTGCACTGTCAGTAGATGAAT
ACTTCTATCGCAAGGTGATGCTGGCGTATCAGCAGAGGGTTCTGTTCGTGGTTAATCAGGCTGACAAGGCCGAACCCTGC
CATCAGTGGAATACCACCAGCAATACACCATCTCATAGCCAACAGTCGACAATTGAGGCCAAGCGGAGCGCTGTACAGCA
GCTCTTCCTGCCGCACCATCCAGTCTGTGTTGTATCGGCCCGAACGGGTTGGGGGCTGGATGCGATGGTAGAGGCGATGA
TGCGTAATCTGCCTGATCGGGCCACCAGCCCATTGACGACACAACTGCATGGAAGGCTCTGCACAGGTTCACTAAAAAAG
GAAGCCCGCGAGCGATTTAGCAATGCCGTAGATGAAATGATTGGCACTGTGGAATCGTCATCTTTTCTGCCTGCGCCTGT
GAGGTCCGTGATTCGAACCGTGCGGGAAGCGGTGGTGACTGTTGCTCGTGCTGTATGGGACTGGATTTTCTTCTGA

Protein sequence :
MQKLDGLKAFEQPLASLPHPLRKLILARLRSLTQYEPVIGIMGKTGVGKSSLCNALFQGEVTPVSDVKACTRDVLRFRLC
NGNHSLMVVDLPGVGESEQRDEEYTALYRHILPELDLVLWVIKTDDRALSVDEYFYRKVMLAYQQRVLFVVNQADKAEPC
HQWNTTSNTPSHSQQSTIEAKRSAVQQLFLPHHPVCVVSARTGWGLDAMVEAMMRNLPDRATSPLTTQLHGRLCTGSLKK
EARERFSNAVDEMIGTVESSSFLPAPVRSVIRTVREAVVTVARAVWDWIFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 6e-78 61
unnamed AAL99256.1 unknown Not tested LEE Protein 3e-77 61
unnamed AAL08471.1 unknown Not tested SRL Protein 3e-77 61
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 1e-77 61
Z1210 NP_286745.1 histone Not tested TAI Protein 6e-78 61
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 6e-77 61
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 6e-77 61
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 4e-77 60
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 9e-77 60
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 5e-77 60
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 2e-77 60
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 3e-75 60
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 1e-76 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PANA5342_1119 YP_005194549.1 GTPase family protein VFG1062 Protein 2e-77 61
PANA5342_1119 YP_005194549.1 GTPase family protein VFG0654 Protein 2e-77 60
PANA5342_1119 YP_005194549.1 GTPase family protein VFG1674 Protein 1e-77 60