Gene Information

Name : PANA5342_1114 (PANA5342_1114)
Accession : YP_005194544.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1150611 - 1151432 bp
Length : 822 bp
Strand : -
Note : -

DNA sequence :
ATGCGATTAGCCAGCCGCTTTGGCCGTATAAATCAGATACGCCGTGACCGGCCTTTGACCCACGAAGAGCTGATGAGTCA
TGTCCCCAGCGTGTTCGGGAGTGACAAGCATGAATCTCGTTCAGACCGTTACACCTACATCCCGACCATCACCATCCTCG
AAAGCCTGCAGCGTGAAGGCTTTGAGCCGTTCTTTGCCTGCCAGACGAAGGTTCGTGACCTGAGTAAGCGGGAGCACACC
AAACACATGCTGCGCCTGCGCCGTGCCGGTCAACTGACCGGGCATCAGGTGCCGGAAATCATTTTGCTGAACAGCCATGA
CGGCTCATCAAGCTACCAGATGCTGCCGGGACTATTTCGTGGTGTCTGCACCAACGGCCTGGTCTGTGGTCAGTCGTTCG
GAGAAGTGCGGGTCCCGCATAAAGGTAATGTCGTCGAGAAGGTGATTGAAGGGGCTTACGAAGTACTCGGCGTGTTTGAC
CGGGTGGAGGAGAAGCGCGATGCAATGCAGTCACTGGCACTGCCAGAACCAGCCTGTAACGCCCTGGCGAATGCCGCGCT
TAAGTATCGCTTTGGTGAAGACCACCAGCCGGTCACGGTATCGCAGTTGCTGACCCCACGTCGCCGGGAGGACTACAGCG
ATGACCTGTGGACCATATACCAGCGCGTGCAGGAGAACCTGATGAAAGGTGGATTGTCGGGGCGAACCGCTCAGGGGAAA
AGCAGCCGCACCCGTGCTGTTACCGGTATTGATGGCGATGTGAAGCTCAATCGCGCCCTGTGGGTAATGGCAGAAAACAT
GCTTGCGTTTTTCGAGCGTTAA

Protein sequence :
MRLASRFGRINQIRRDRPLTHEELMSHVPSVFGSDKHESRSDRYTYIPTITILESLQREGFEPFFACQTKVRDLSKREHT
KHMLRLRRAGQLTGHQVPEIILLNSHDGSSSYQMLPGLFRGVCTNGLVCGQSFGEVRVPHKGNVVEKVIEGAYEVLGVFD
RVEEKRDAMQSLALPEPACNALANAALKYRFGEDHQPVTVSQLLTPRRREDYSDDLWTIYQRVQENLMKGGLSGRTAQGK
SSRTRAVTGIDGDVKLNRALWVMAENMLAFFER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1215 NP_286750.1 hypothetical protein Not tested TAI Protein 9e-102 76
Z1655 NP_287158.1 hypothetical protein Not tested TAI Protein 9e-102 76
z1215 CAD33785.1 Z1215 protein Not tested PAI I 536 Protein 6e-103 76
unnamed CAI43843.1 hypothetical protein Not tested LEE Protein 1e-97 75
S3199 NP_838482.1 hypothetical protein Not tested SHI-1 Protein 6e-98 75
aec71 AAW51754.1 Aec71 Not tested AGI-3 Protein 1e-97 75
SF2994 NP_708768.1 hypothetical protein Not tested SHI-1 Protein 6e-98 75
yafZ ADD91704.1 YafZ Not tested PAI-I AL862 Protein 1e-97 75
unnamed CAD42096.1 hypothetical protein Not tested PAI II 536 Protein 1e-101 75
yafZ CAE85199.1 YafZ protein Not tested PAI V 536 Protein 4e-105 75
yafZ YP_854321.1 hypothetical protein Not tested PAI I APEC-O1 Protein 4e-97 74
ORF_47 AAZ04456.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 3e-97 74
ECO103_3587 YP_003223444.1 hypothetical protein Not tested LEE Protein 2e-97 74
c5156 NP_757004.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-96 74
unnamed CAD66201.1 hypothetical protein Not tested PAI III 536 Protein 1e-96 73
ORF C80 AAN62174.1 conserved hypothetical protein; associated with oriT region on plasmids Not tested PAGI-2(C) Protein 2e-78 56
ORF SG86 AAN62307.1 conserved hypothetical protein Not tested PAGI-3(SG) Protein 1e-75 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PANA5342_1114 YP_005194544.1 hypothetical protein VFG1526 Protein 3e-103 76
PANA5342_1114 YP_005194544.1 hypothetical protein VFG1615 Protein 8e-102 75
PANA5342_1114 YP_005194544.1 hypothetical protein VFG0658 Protein 2e-98 75
PANA5342_1114 YP_005194544.1 hypothetical protein VFG1676 Protein 7e-97 73