Gene Information

Name : radC3 (PANA5342_1112)
Accession : YP_005194542.1
Strain : Pantoea ananatis LMG 5342
Genome accession: NC_016816
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1149582 - 1150124 bp
Length : 543 bp
Strand : -
Note : -

DNA sequence : 
ATGAATACCGTATTATGCCCGGAGTCTTCACAGCGTGAACTCTTTCCGCTGACGGTTATGCCTCGGCATAGTTGCCTGCT
CCCAGCGACATCCGTATTGACACCTTATGCCCAACGGACCATCCGCCGGGCTATCAACCTGCTGGATAAATATCTGCGCC
AGCCTGGAATAGCCTTTACCTCAAGTACTGCTGCCCGTGACTGGCTTCGGTTACTGCTGGCCGGACAGGAGCGGGAAGTG
TTTATGGTGCTCTATCTCGATAGCCAGCACTGTTTACTGGAGAGCGAAACGCTTTTTGCTGGTTCGATTAACCATGTCCA
GGTCCATCCCCGTGAGGTAGTGAAGTCAGCGCTTCGCTTCAATGCTGCAGCTGTCGTACTGGCGCATAACCATCCATCCG
GTGACCCGGAGCCCAGTCAATGTGACCGCAACATTACGGGCAGGCTTAAAGAAGCGCTAGCACTGGTTGATGTGAACACG
CTCGATCATCTGGTCATCGGTTCAGAGGGCATTGTGTCGTTCGCAGAGCGAGGCTGGATATGA

Protein sequence : 
MNTVLCPESSQRELFPLTVMPRHSCLLPATSVLTPYAQRTIRRAINLLDKYLRQPGIAFTSSTAARDWLRLLLAGQEREV
FMVLYLDSQHCLLESETLFAGSINHVQVHPREVVKSALRFNAAAVVLAHNHPSGDPEPSQCDRNITGRLKEALALVDVNT
LDHLVIGSEGIVSFAERGWI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 4e-35 61
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 5e-35 61
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 5e-35 61
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 4e-35 60
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 8e-36 58
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 1e-35 57
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 5e-36 56
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-35 56
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 4e-36 56
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 1e-35 56
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 5e-36 56
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 8e-36 56
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 8e-36 56
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 8e-36 56
unnamed AAL08475.1 unknown Not tested SRL Protein 7e-36 56
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 8e-36 55
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 7e-36 55
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 5e-36 55
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 4e-34 55
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 6e-27 54
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-33 51
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-33 51
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-33 50
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 2e-26 44
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 5e-23 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
radC3 YP_005194542.1 DNA repair protein RadC VFG0660 Protein 2e-35 61
radC3 YP_005194542.1 DNA repair protein RadC VFG1528 Protein 4e-36 56
radC3 YP_005194542.1 DNA repair protein RadC VFG1066 Protein 3e-36 56
radC3 YP_005194542.1 DNA repair protein RadC VFG1678 Protein 3e-36 55
radC3 YP_005194542.1 DNA repair protein RadC VFG1617 Protein 3e-36 55
radC3 YP_005194542.1 DNA repair protein RadC VFG1119 Protein 3e-34 51