Gene Information

Name : ragA (SFHH103_00719)
Accession : YP_005188043.1
Strain : Sinorhizobium fredii HH103
Genome accession: NC_016812
Putative virulence/resistance : Virulence
Product : response regulator MprA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 791178 - 791879 bp
Length : 702 bp
Strand : +
Note : -

DNA sequence : 
ATGGTCACCCGTATGAAGATTCTGATTGTTGAAGATGACCTCGAGGCGGCCGCCTATCTTGCGAAGGCGTTCCGCGAAGC
GGGCATCGTGTCCGACCACGCCAGTGACGGCGAGAGCGGCTTGTTCATGGCGAGCGAAAACGCTTACGACGTGCTCGTCG
TCGACCGCATGCTGCCGCGCCGGGACGGTCTGTCGCTGATCACCGAATTGAGGCGCAGGGGCATCCACACGCCGGTGCTC
ATCCTCTCGGCCCTCGGCCAGGTGGACGACCGGGTGACCGGCCTTCGCGCCGGCGGCGACGACTATCTCCCCAAACCCTA
TGCCTTCAGCGAGCTCCTGGCGCGCGTCGAGGTGCTTGGCCGGCGCAAGGGAACACCCGACCAGGACATGGTCTATCGCG
TCGGCGACCTCGAACTGGACCGGCTCGCCCATTCGGTCCGCCGGCAGGGCAAGGAAATCCCGCTGCAGCCCCGCGAGTTC
CGGCTGCTCGAATATCTGATGAAGAATGCCGGACAGGTCGTGACCAGGACCATGCTGCTCGAAAACGTGTGGGACTATCA
CTTCGATCCGCAGACCAACGTGATCGACGTGCACGTGTCGCGCTTGCGCTCCAAGATCGAGAAGGATTTCGAACCGCCGC
TTCTGAGGACGGTTCGCGGCGCCGGCTACATGATCAAGGACGACCGGATCGCTGAGGCATGA

Protein sequence : 
MVTRMKILIVEDDLEAAAYLAKAFREAGIVSDHASDGESGLFMASENAYDVLVVDRMLPRRDGLSLITELRRRGIHTPVL
ILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPDQDMVYRVGDLELDRLAHSVRRQGKEIPLQPREF
RLLEYLMKNAGQVVTRTMLLENVWDYHFDPQTNVIDVHVSRLRSKIEKDFEPPLLRTVRGAGYMIKDDRIAEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-38 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ragA YP_005188043.1 response regulator MprA BAC0347 Protein 2e-45 47
ragA YP_005188043.1 response regulator MprA BAC0083 Protein 5e-45 46
ragA YP_005188043.1 response regulator MprA BAC0111 Protein 4e-49 46
ragA YP_005188043.1 response regulator MprA BAC0308 Protein 1e-42 46
ragA YP_005188043.1 response regulator MprA BAC0125 Protein 6e-46 45
ragA YP_005188043.1 response regulator MprA BAC0197 Protein 1e-43 45
ragA YP_005188043.1 response regulator MprA BAC0638 Protein 2e-37 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ragA YP_005188043.1 response regulator MprA VFG1390 Protein 4e-38 43
ragA YP_005188043.1 response regulator MprA VFG1389 Protein 7e-34 43
ragA YP_005188043.1 response regulator MprA VFG0596 Protein 1e-38 41