Gene Information

Name : rcaC (SFHH103_00711)
Accession : YP_005188035.1
Strain : Sinorhizobium fredii HH103
Genome accession: NC_016812
Putative virulence/resistance : Virulence
Product : Protein rcaC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 782233 - 782904 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATCCTGATAGTCGAGGACGACGTCAATCTGAACAGGCAACTGGCCGAAGCGTTGAAGGAAGCCGGTTACGTCGT
CGACCAGGCCTATGACGGCGAGGAGGGCCACTATCTCGGCGACGCAGAACCCTACGATGCGATTATCCTCGATATCGGCC
TGCCGGAAATGGACGGGATCACCGCGCTGGAAAAGTGGCGCGCCGACGGCAAGACCATGCCGGTGCTGATCTTGACGGCC
CGCGACCGCTGGAGCGACAAGGTGGCGGGCATCGATGCCGGTGCCGATGATTATGTGGCGAAGCCCTTCCATGTCCAGGA
GGTGCTCGCCCGCATCCGGGCGCTGATCCGTCGCGCCGCAGGGCATGCCAGTTCCGAGATCGTCTGTGGCCCCGTCCGCC
TCGACACGAAAGGCTCGAAGGCGACCGTCGGCGGCGTTGCACTGAAACTGACCTCCCACGAGTTCCGACTGCTCTCCTAT
CTCATGCACCACATGGGCCAGGTTGTTTCCCGCACGGAACTCGTCGAGCACATGTATGATCAGGACTTCGACCGCGACTC
CAACACGATCGAGGTCTTCATCGGCCGGCTCCGCAAGAAGATCGGCAATGACCTGATCGAAACGGTGCGCGGTCTCGGAT
ATCGGATGCAAGCACCCGGCAATGGCCATTAG

Protein sequence : 
MRILIVEDDVNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAIILDIGLPEMDGITALEKWRADGKTMPVLILTA
RDRWSDKVAGIDAGADDYVAKPFHVQEVLARIRALIRRAAGHASSEIVCGPVRLDTKGSKATVGGVALKLTSHEFRLLSY
LMHHMGQVVSRTELVEHMYDQDFDRDSNTIEVFIGRLRKKIGNDLIETVRGLGYRMQAPGNGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-27 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rcaC YP_005188035.1 Protein rcaC NC_002516.2.879194.p Protein 9e-38 46
rcaC YP_005188035.1 Protein rcaC CP000647.1.gene1136. Protein 4e-36 45
rcaC YP_005188035.1 Protein rcaC CP004022.1.gene1005. Protein 1e-39 45
rcaC YP_005188035.1 Protein rcaC BAC0487 Protein 2e-27 45
rcaC YP_005188035.1 Protein rcaC BAC0530 Protein 4e-36 45
rcaC YP_005188035.1 Protein rcaC CP001918.1.gene2526. Protein 2e-35 44
rcaC YP_005188035.1 Protein rcaC CP001138.1.gene1939. Protein 5e-36 44
rcaC YP_005188035.1 Protein rcaC NC_002695.1.913289.p Protein 2e-35 43
rcaC YP_005188035.1 Protein rcaC CP000034.1.gene2022. Protein 4e-36 43
rcaC YP_005188035.1 Protein rcaC BAC0111 Protein 5e-31 42
rcaC YP_005188035.1 Protein rcaC BAC0197 Protein 2e-29 42
rcaC YP_005188035.1 Protein rcaC BAC0347 Protein 6e-28 41
rcaC YP_005188035.1 Protein rcaC BAC0125 Protein 2e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rcaC YP_005188035.1 Protein rcaC VFG0475 Protein 4e-36 44
rcaC YP_005188035.1 Protein rcaC VFG0596 Protein 2e-27 42
rcaC YP_005188035.1 Protein rcaC VFG0473 Protein 6e-28 42
rcaC YP_005188035.1 Protein rcaC VFG1389 Protein 6e-28 41