Gene Information

Name : sitD (SFHH103_03135)
Accession : YP_005190452.1
Strain : Sinorhizobium fredii HH103
Genome accession: NC_016812
Putative virulence/resistance : Virulence
Product : Chelated iron transport system membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3395808 - 3396659 bp
Length : 852 bp
Strand : +
Note : -

DNA sequence : 
ATGATGTCTTTCGACATGCTCACCGCCGTCTTCGAGTTCGAGTTCATGCGCAACGCGCTGCTGATCTCGGTCCTCGTCGC
CGTCCCGACGGCCATGCTCTCCTGCTTCCTGGTGCTGAAGGGCTGGTCGCTGATGGGCGACGCGATCTCGCACGCGGTTT
TCCCGGGCGTCGTCATCTCCTACATCGTCGGCCTACCGCTTGCCGTCGGCGCCTTTGCCGCCGGCATGTGCTGCGCCCTC
TTGACCGGGTATCTCAAGGAAAACAGCCGCATCAAGCAGGATACGGTGATGGGCGTCGTCTTTTCCGGCATGTTCGGCCT
CGGCCTGGTGCTCTACACCAAGATCCAGAGTGACGTGCATCTCGACCACATCCTCTTCGGCGACATGCTCGGCATCGGCT
GGGGCGATATCCTCGAAACCGGTATCATCGCCGTTTTCGCCGGGGGCATCCTTTCCCTCAAATGGCGCGACCTGCTGCTG
CACGCCTTCGACCCGGCCCAGGCGCAAGCCGTCGGCTTGCCGGTCGGCTGGCTGCATTACGGGCTGCTCGCCATTCTGTC
GTTGACGATCGTCGGCGCGCTGAAAGCCGTCGGACTGATCCTCGCGATCGCCATGCTGATCGCCCCCGGCGCGATCGCCT
TTCTGGTGACGCGGACATTTGGCGGCATGCTGATCGTCGCGGTCTCCGTTGCGGTCCTCGCTTCGTTCTCGGGCGTTTAC
CTATCCTTCTTCATCGACAGCGCCCCCGCCCCGACCATCGTCCTCCTGATGACAGCGATCTTTCTCGTCGCCTTCGCCTG
GTCCACCTGGCGGACGGCGCGAATCGAAGCGCATCGCACCCGCGTCGAATAG

Protein sequence : 
MMSFDMLTAVFEFEFMRNALLISVLVAVPTAMLSCFLVLKGWSLMGDAISHAVFPGVVISYIVGLPLAVGAFAAGMCCAL
LTGYLKENSRIKQDTVMGVVFSGMFGLGLVLYTKIQSDVHLDHILFGDMLGIGWGDILETGIIAVFAGGILSLKWRDLLL
HAFDPAQAQAVGLPVGWLHYGLLAILSLTIVGALKAVGLILAIAMLIAPGAIAFLVTRTFGGMLIVAVSVAVLASFSGVY
LSFFIDSAPAPTIVLLMTAIFLVAFAWSTWRTARIEAHRTRVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-79 66
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-79 66
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-79 65
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-79 65
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-79 65

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_005190452.1 Chelated iron transport system membrane protein BAC0352 Protein 1e-79 66
sitD YP_005190452.1 Chelated iron transport system membrane protein BAC0442 Protein 2e-64 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_005190452.1 Chelated iron transport system membrane protein VFG0528 Protein 1e-79 66