Gene Information

Name : sitC (SFHH103_03134)
Accession : YP_005190451.1
Strain : Sinorhizobium fredii HH103
Genome accession: NC_016812
Putative virulence/resistance : Virulence
Product : Chelated iron transport system membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3394951 - 3395811 bp
Length : 861 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGCCCTGCTCGCCGAACCCTTCACCTATGGCTACATGCTGAACGCCATGTGGGTCAGCGCGCTGGTCGGCGCCGT
CTGCGCCTTCCTGTCGGCCTATCTGATGCTGAAGGGTTGGTCGCTGATCGGCGACGCACTGTCCCATGCGATCGTCCCCG
GCGTCGCCGGCGCCTATATGCTCGGCCTCCCATTCTCGCTCGGCGCCTTCTTCTCCGGCGGGCTCGCCGCCGCCGCCATG
CTGTTCCTGAACCAGCGGACGCGGTTGAAGGAGGATACGATCATCGGCCTGATCTTCACCTCCTTCTTCGGCCTCGGCCT
GTTCATGGTGTCGCTGTCGCCGACGTCGGTGAACATCCAGACGATCGTGCTCGGCAACATCCTCGCCATCACCCCGGCCG
ACACGCTGCAGCTCGTCCTTATCGGCATCGTCTCGCTGCTGATCCTCTCGGCGAAATGGAAGGACCTGATGGTGACCTTC
TTCGACGAGAGCCATGCCCGCTCGATCGGCATCCATACGACCTTCCTGAAGGTGCTGTTCTTCACCCTGCTTTCGGCCTG
CACGGTGGCCGCGCTGCAGACCGTCGGCGCCTTTCTCGTCATCGCCATGGTCGTGACGCCGGGCGCGACTGCCTATCTGC
TCACCGACCGCTTCCCGCGCCTGATCATCATCAGCATCGCCATCGGCGCGGCCACGAGCTTCTTCGGCGCCTATGCGAGC
TATTTCCTCGACGGCGCCACCGGCGGCATCATCATCGTGCTGCAGACGTTGATCTTCCTGCTCGCCTTCGTGCTGGCCCC
GAAACACGGGCTGATCGCCGCCCGCCGCCGCGCGGCCGAGGCGTTGGAGGTTGCCCGATGA

Protein sequence : 
MIALLAEPFTYGYMLNAMWVSALVGAVCAFLSAYLMLKGWSLIGDALSHAIVPGVAGAYMLGLPFSLGAFFSGGLAAAAM
LFLNQRTRLKEDTIIGLIFTSFFGLGLFMVSLSPTSVNIQTIVLGNILAITPADTLQLVLIGIVSLLILSAKWKDLMVTF
FDESHARSIGIHTTFLKVLFFTLLSACTVAALQTVGAFLVIAMVVTPGATAYLLTDRFPRLIIISIAIGAATSFFGAYAS
YFLDGATGGIIIVLQTLIFLLAFVLAPKHGLIAARRRAAEALEVAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-68 78
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-68 78
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-68 78
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-68 78
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 8e-69 78

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_005190451.1 Chelated iron transport system membrane protein BAC0351 Protein 5e-69 78
sitC YP_005190451.1 Chelated iron transport system membrane protein BAC0441 Protein 8e-64 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_005190451.1 Chelated iron transport system membrane protein VFG0527 Protein 5e-69 78