Gene Information

Name : sitB (SFHH103_03133)
Accession : YP_005190450.1
Strain : Sinorhizobium fredii HH103
Genome accession: NC_016812
Putative virulence/resistance : Virulence
Product : ABC Mn+2/Fe+2 transporter, ATPase subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3394025 - 3394954 bp
Length : 930 bp
Strand : +
Note : -

DNA sequence : 
ATGAACCTTCAGGTAAAGGCCCGGCCGACCCCGCGACCGGGCCCTCTGGACGAGAGCAGCGGCATTCGCGTCCACAATGC
CACCGTCACCTATCGCAACGGCCACCGCGCCCTGCATGATGCCTCCTTCGAGATTCCGACCGGCACGATCGCCGCGCTGG
TCGGCGTCAATGGCAGCGGCAAGTCGACGCTGTTCAAGGCCATCATGGGCTTCGTCCGGTTGGCGAAAGGCGATATCTCG
GTCCTCGGCCTCACCGTGCCGCAGGCACTGAAGAAGAATCTCGTCGCCTATGTCCCACAGGCCGAGGAGGTCGACTGGAA
TTTTCCCGTCCTCGTCGAGGATGTGGTGATGATGGGCCGTTACGGCCACATGAACATGCTGCGCATCCCGAAGCGGGCCG
ACCATGAGGCGGTCGAGGCGGCGCTGGCGCGGGTCGGCATGAGCGATTTCCGCAAGCGCCAGATCGGCGAGCTTTCCGGC
GGCCAGAAGAAGCGCGTCTTCCTTGCCCGGGCGCTCGCCCAGGACGGCCGCGTCATCCTGCTCGACGAGCCCTTCACCGG
CGTCGACGTCAAGACCGAAGACGCGATCATCCGCCTGCTCCTCGCGCTTCGCGACGAGGGACGCGTGATGCTCGTCTCCA
CGCACAATCTCGGCAGCGTGCCGGAATTCTGCGACCGCACCGTGCTCCTGAAGAACACCGTTCTCGCCTACGGTCCGACC
GAGACCACCTTCACCCGCGACAATCTCGAACTCGCCTTCGGCGGCGTGCTGCGTCACTTCGTACTCGGCGGCGACAGCCT
GCACGACGATGCCGATCCCCGCCAGCTTTCCGTCATCACCGATGACGAGCGACCGCTTGTCATGTACGGCGCGAAGGGAA
AAATGGTGACGCAGCCGGCCAAGCTCGAGACCGAGGCGGACAGCGAATGA

Protein sequence : 
MNLQVKARPTPRPGPLDESSGIRVHNATVTYRNGHRALHDASFEIPTGTIAALVGVNGSGKSTLFKAIMGFVRLAKGDIS
VLGLTVPQALKKNLVAYVPQAEEVDWNFPVLVEDVVMMGRYGHMNMLRIPKRADHEAVEAALARVGMSDFRKRQIGELSG
GQKKRVFLARALAQDGRVILLDEPFTGVDVKTEDAIIRLLLALRDEGRVMLVSTHNLGSVPEFCDRTVLLKNTVLAYGPT
ETTFTRDNLELAFGGVLRHFVLGGDSLHDDADPRQLSVITDDERPLVMYGAKGKMVTQPAKLETEADSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-91 73
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-90 73
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-90 73
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-90 73
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-91 73

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_005190450.1 ABC Mn+2/Fe+2 transporter, ATPase subunit BAC0350 Protein 9e-91 73
sitB YP_005190450.1 ABC Mn+2/Fe+2 transporter, ATPase subunit BAC0440 Protein 1e-90 69
sitB YP_005190450.1 ABC Mn+2/Fe+2 transporter, ATPase subunit BAC0400 Protein 9e-46 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_005190450.1 ABC Mn+2/Fe+2 transporter, ATPase subunit VFG0526 Protein 8e-91 73