Gene Information

Name : sitA (SFHH103_03132)
Accession : YP_005190449.1
Strain : Sinorhizobium fredii HH103
Genome accession: NC_016812
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter substrate-binding lipoprotein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3393126 - 3394028 bp
Length : 903 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGATCGGACGCGGCGCATGATTCTGGCGGCAGCAACGGCAATGGCTGCCTTTTCCCTCCTGTCCGGCGCGGCGGC
AGCGGAAAAATTCAAGGCGGTTACCACTTTCACGGTCATTGCCGACATGGCGCAGAATGTTGCCGGCGATGCGGCGATCG
TCGAATCCATCACCAAGCCCGGCGCCGAAATCCACAACTACCAGCCGACCCCGCGCGACATCCTGAAGGCGCATGATGCC
CAATTGATCCTCTGGAACGGCCTCAACCTCGAGCTCTGGTTCGAGAAATTCTTCCAGAACTTCGACGACATTCCGGGCGT
CGTAGTCTCCGAAGGCGTCGAGCCGATGGGCATCGCCGAAGGCCCCTATACGGGCAAGCCGAACCCGCATGCCTGGATGT
CGCCGTCGGCGGCGATGATCTATGTCGACAACATCCGCGACGCCTTCGTGAAATTCGACCCGGAGAACGCCGAGGCCTAC
AAGGCGAATGCCGAGGCCTATAAGAAGAAGATCGAGGCGACCATCGCGCCGATCAGGGCCGAACTCGACAAGATCCCGGC
GGAAAAGCGCTGGCTGGTCTCCAGCGAGGGCGCCTTCAGCTATCTCACGCGGGATTTCGGCCTGAAGGAGCTCTATCTCT
GGCCGATCAACGCCGACCAGCAGGGCACGCCGCAGCAGGTGCGCAAGGTGATCGACGCGGTGAGGGCCAACCACATTCCG
GTGGTGTTCTCCGAGAGCACCATCTCGCCAGATCCGGCCATGCAGGTGGCACGCGAGACGGGTGTCAAATATGGCGGCGT
GCTCTATGTCGATTCCTTGAGCGAGGCCGACGGACCGGTCCCGACCTATATCGATCTCCTGCGTGTCACGTCCGAAACGA
TCGCGAAAGGTCTTTCGCAATGA

Protein sequence : 
MIDRTRRMILAAATAMAAFSLLSGAAAAEKFKAVTTFTVIADMAQNVAGDAAIVESITKPGAEIHNYQPTPRDILKAHDA
QLILWNGLNLELWFEKFFQNFDDIPGVVVSEGVEPMGIAEGPYTGKPNPHAWMSPSAAMIYVDNIRDAFVKFDPENAEAY
KANAEAYKKKIEATIAPIRAELDKIPAEKRWLVSSEGAFSYLTRDFGLKELYLWPINADQQGTPQQVRKVIDAVRANHIP
VVFSESTISPDPAMQVARETGVKYGGVLYVDSLSEADGPVPTYIDLLRVTSETIAKGLSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-90 73
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 4e-90 73
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 4e-90 73
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 4e-90 73
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-90 73

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA YP_005190449.1 Manganese ABC transporter substrate-binding lipoprotein BAC0349 Protein 2e-90 73
sitA YP_005190449.1 Manganese ABC transporter substrate-binding lipoprotein BAC0439 Protein 1e-86 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA YP_005190449.1 Manganese ABC transporter substrate-binding lipoprotein VFG0525 Protein 2e-90 73