Gene Information

Name : fliI (SFHH103_00314)
Accession : YP_005187639.1
Strain : Sinorhizobium fredii HH103
Genome accession: NC_016812
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase FliI
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 362403 - 363803 bp
Length : 1401 bp
Strand : +
Note : -

DNA sequence :
ATGGAACCCCAAGGCTCTGACACCATTCCAGCTTCGACCTCGCTGGCGGCGCTCGCCGGCCTTGTGGAGCGCTATGCCAA
TCCCGACGTTTCGATCGCCCCTGGCGGTCATGTCCAGACGATCTCGCCGGGGCACTATACCGTTACCGGTCTTTCTCGCC
ATGTGCGGCTGGGGGATTTCGTGGCGCACAAGAGCGCCACCGGCACCCATCTCGGCGAAGTGGTGCGCGTCGAACCGGAG
CGGGTCGTCGTCTGCCCGATCGAGCCCGGCGATCCCATCGGCATCCACGATACCGTCATCCGCAAGGGCGCCTTCCGTAT
CGCGCCGACGGACAACTGGTGCGGCCGGACGATCAACGCGCTGGCCGAACCGATCGATGGCCGCGGCCCCCTCATGCAGG
GCGACATGCGTCGTTCGATCTCCAATACTGCGCCGCCGTCGATGACGCGCAGACGGGTCGAGCAGGGTTTCAAGACGGGC
GTGCGCGCCGTCGACATCTTCTCGCCGCTCTGCCTCGGCCAGCGCCTCGGTATCTTTGCCGGCTCCGGCGTCGGCAAGTC
GACGCTGCTTTCGATGCTGGCGCGTGCCGACGCCTTCGACAAGGTGGTGATCGCGCTGGTCGGCGAACGCGGCCGCGAAG
TGCGTGAATTCATCGAGGACACGCTCGGCGACAATCTTGCCAAATCGGTTGCCGTCGTCGCCACCAGCGACGAAAGCCCG
ATGCTCAGAAAAATGGCGCCTCTGACGGCGGTGACGATCGCCGAGCACTATCGCGACAAGGGCGACAACGTTCTGCTGAT
TATCGACAGCGTGACGCGCTTCGCCCATGCGATCCGCGAGGTGGCGACCGCGGCAGGCGAGCCGCCGATCGCCCGCGGCT
ATCCGGCTTCGGTCTTCACCGAATTGCCGCGCCTGCTCGAGCGGGCCGGCCCTGGCGCCGAGGGGACCGGGACGATTACC
GCGATCATCTCGATCCTGGTCGACGGCGACAATCACAACGATCCGGTTGCCGATTCGGCGCGCGGCATCCTCGACGGCCA
CATCGTCCTCGACCGCAGCCTGGCGGAAGAGGGGCGCTATCCGCCGATCGATCCGCTGGCTTCCATCTCGCGCCTGGCAA
GGAAGGCCTGGACGCCGGATCAGGAAAAGCTCGTGGCGCGGCTGAAATCGCTGATCCATCGCTTCGAGGAAACCCGCGAC
CTCAGGCTGATCGGCGGCTACCGGGCCGGCGGCGATCCCGATCTCGACATGGCGATCAAACAGGTACCCGTCATCTATGA
CGTCCTCAAGCAGACCCCCGGCGAGCGATCCGCCGCCGATGCCTTCACCGACTTGGCAAATGCGCTGAAGGCGGCCGCCA
TGGGCAACCAGCCCGCCGCGGCTATCCGGGGGAAGGGGTAG

Protein sequence :
MEPQGSDTIPASTSLAALAGLVERYANPDVSIAPGGHVQTISPGHYTVTGLSRHVRLGDFVAHKSATGTHLGEVVRVEPE
RVVVCPIEPGDPIGIHDTVIRKGAFRIAPTDNWCGRTINALAEPIDGRGPLMQGDMRRSISNTAPPSMTRRRVEQGFKTG
VRAVDIFSPLCLGQRLGIFAGSGVGKSTLLSMLARADAFDKVVIALVGERGREVREFIEDTLGDNLAKSVAVVATSDESP
MLRKMAPLTAVTIAEHYRDKGDNVLLIIDSVTRFAHAIREVATAAGEPPIARGYPASVFTELPRLLERAGPGAEGTGTIT
AIISILVDGDNHNDPVADSARGILDGHIVLDRSLAEEGRYPPIDPLASISRLARKAWTPDQEKLVARLKSLIHRFEETRD
LRLIGGYRAGGDPDLDMAIKQVPVIYDVLKQTPGERSAADAFTDLANALKAAAMGNQPAAAIRGKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-65 50
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-65 50
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-65 50
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-64 48
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 8e-65 48
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-61 46
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 2e-59 45
escN YP_003223475.1 translocator EscN Virulence LEE Protein 2e-58 45
escN AAC38383.1 EscN Virulence LEE Protein 2e-59 45
escN YP_003236088.1 translocator EscN Virulence LEE Protein 4e-59 45
escN NP_290268.1 hypothetical protein Virulence LEE Protein 3e-59 45
escN CAI43874.1 EscN protein Virulence LEE Protein 1e-58 45
ECs4568 NP_312595.1 EscN Virulence LEE Protein 3e-59 45
escN AAC31513.1 L0034 Virulence LEE Protein 2e-59 45
unnamed AAL06369.1 EscN Virulence LEE Protein 1e-59 45
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-60 44
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 8e-59 44
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 8e-59 44
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 4e-60 44
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-60 44
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 8e-49 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_005187639.1 flagellum-specific ATP synthase FliI VFG0048 Protein 2e-64 48
fliI YP_005187639.1 flagellum-specific ATP synthase FliI VFG0192 Protein 3e-62 47
fliI YP_005187639.1 flagellum-specific ATP synthase FliI VFG2331 Protein 9e-64 47
fliI YP_005187639.1 flagellum-specific ATP synthase FliI VFG2144 Protein 2e-65 46
fliI YP_005187639.1 flagellum-specific ATP synthase FliI VFG0730 Protein 1e-59 45
fliI YP_005187639.1 flagellum-specific ATP synthase FliI VFG0812 Protein 1e-59 45
fliI YP_005187639.1 flagellum-specific ATP synthase FliI VFG0515 Protein 3e-60 44