|
Name : SFHH103_01472 (SFHH103_01472) Accession : YP_005188795.1 Strain : Sinorhizobium fredii HH103 Genome accession: NC_016812 Putative virulence/resistance : Resistance Product : Tetracycline resistance protein Function : - COG functional category : - COG ID : - EC number : - Position : 1588392 - 1589693 bp Length : 1302 bp Strand : + Note : - DNA sequence : ATGCTCGACAAGAAATTCGTGCGACGCGGCCTGTTCCTCGTCTTCTTGATTCTGCTTCTCGACATCATGGGCATCGCGAT CATCGTGCCCGTGCTGCCGAGCTATCTTCAGGAACTGACCGGGGCGAATGTCGGCGAGGCTGCTATCGAGGGCGGCTGGC TGCTGCTCGTCTATTCGGGGATGCAGTTTCTCTTTGCGCCGGTGATCGGCAATTTGAGCGACCGGTTCGGACGGCGGCCG ATCCTGCTGGCCTCGGTCTTGACGTTCGCGATCGACAACCTGATCTGCGCGCTGGCGACGAGCTATTGGATGCTGTTTGT CGGCCGCATTCTCGCCGGCATCAGCGGCGCGAGCTTTGGCACTGCCTCCGCCTTCATCGCCGACGTCAGCGACGATAGCA ACCGCGCCAGGAACTTCGGGTTGATCGGCATCGCCTTCGGCACGGGATTCGCGCTCGGTCCTGTGATCGGCGGTCTCCTC GGCGAACTGGGTCCGCGCGTACCCTTCTACGGCGCTGCCGCGCTGTCCTTCGTCAACTTCGCGATCGGCCTGTTCCTGCT GCCCGAGACGCTTCATCCGGCAAATCGGCGCCGCTTCGAGTGGCATCGGGCAAATCCGCTCGGCGCGCTGAAGCAGATGC GCAACTATCCCGGCATCGGCTGGGTGGGTCTCGTCTTCTTTCTCTATTGGCTCGCCCATGCCGTCTATCCGGCGGTCTGG TCGTTCGTTTCGTCCTACCGCTACGGCTGGAGCGAAGGGCAGATCGGACTGTCACTCGGCATCTTTGGCGTTGGCGGAGC GCTGGTGATGGCGGTCGTCCTGCCGCGCGTCGTGTCGCAATTGGGTGAGCGAAGAACGGCGACGCTTGGTCTCGTCTTTA CGGCGCTTGGCATGGCCGGCTACGCGGCTGCCTGGCAGGGCTGGATGGTTTATGCGGTAATCGTCGCGACGGCGCTCGAA AGTCTCGCCGATCCGCCATTGCGCAGCATCGCGTCGGTCCACGTGCCGCCCTCGGCGCAAGGCGAACTGCAAGGCGCTCT CACCAGCATTTCGAGCATAACGACGATCCTCGGACCGCTTCTCTTCACACAGATCTTTGCCTTCTTCACAGGCCCTGCAG CCGGTTACTCGTTCTCCGGCGCGCCTTATGCCGTGGCGGCGTGCCTGATCGTCGCAAGCCTGTCCGTGTTCCTGCTGCGG GTGCGGCACGTCGACGCCGGTGCATTTCAGGATGCCGAGCCGACTTCGGTGAACGGTCCGCGGGAACAGTTTGTGCCGCA ATCGCAAGCGCCTGCGGATTGA Protein sequence : MLDKKFVRRGLFLVFLILLLDIMGIAIIVPVLPSYLQELTGANVGEAAIEGGWLLLVYSGMQFLFAPVIGNLSDRFGRRP ILLASVLTFAIDNLICALATSYWMLFVGRILAGISGASFGTASAFIADVSDDSNRARNFGLIGIAFGTGFALGPVIGGLL GELGPRVPFYGAAALSFVNFAIGLFLLPETLHPANRRRFEWHRANPLGALKQMRNYPGIGWVGLVFFLYWLAHAVYPAVW SFVSSYRYGWSEGQIGLSLGIFGVGGALVMAVVLPRVVSQLGERRTATLGLVFTALGMAGYAAAWQGWMVYAVIVATALE SLADPPLRSIASVHVPPSAQGELQGALTSISSITTILGPLLFTQIFAFFTGPAAGYSFSGAPYAVAACLIVASLSVFLLR VRHVDAGAFQDAEPTSVNGPREQFVPQSQAPAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 5e-49 | 42 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 3e-49 | 42 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 3e-49 | 42 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 3e-49 | 42 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 2e-49 | 42 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 2e-49 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SFHH103_01472 | YP_005188795.1 | Tetracycline resistance protein | NC_011586.7045189.p0 | Protein | 3e-47 | 42 |
| SFHH103_01472 | YP_005188795.1 | Tetracycline resistance protein | X75761.gene.p01 | Protein | 5e-49 | 42 |
| SFHH103_01472 | YP_005188795.1 | Tetracycline resistance protein | NC_010410.6002597.p0 | Protein | 1e-49 | 42 |
| SFHH103_01472 | YP_005188795.1 | Tetracycline resistance protein | CP001485.1.gene2821. | Protein | 1e-49 | 42 |
| SFHH103_01472 | YP_005188795.1 | Tetracycline resistance protein | AF534183.gene.p01 | Protein | 8e-50 | 42 |
