Gene Information

Name : sseD (SL1344_1335)
Accession : YP_005181245.1
Strain : Salmonella enterica SL1344
Genome accession: NC_016810
Putative virulence/resistance : Virulence
Product : putative pathogenicity island effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1443319 - 1443906 bp
Length : 588 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAGCGAGTAACGTAGCACTGGTATTACCAGCGCCTTCCTTGTTAACACCTTCTTCCACTCCATCTCCCTCCGGGGA
GGGAATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGATGAAGCTAATGGAGCTTGCCAAAAAGCTGCGCG
ATATCATGCGCAGCTATAACGTAGAAAAACAACGGCTGGCCTGGGAACTGCAAGTCAATGTTTTACAGACGCAAATGAAA
ACAATTGATGAAGCGTTTAGAGCATCAATGATTACTGCGGGTGGCGCAATGTTGTCGGGTGTACTGACGATAGGATTAGG
GGCCGTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGCCACACAGCTGGGGGCGTCATGGGCCTGGGGGCTG
GTGTAGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCCCAATCTTATAATAAATCC
CTGACGGAAATTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTCACGGTTCTTGC
TGAAATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLAWELQVNVLQTQMK
TIDEAFRASMITAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQDKAIADLQQNGAQSYNKS
LTEIMEKATEIMQQIIGVGSSLVTVLAEILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 1e-65 100
sseD CAA12188.1 SseD Virulence SPI-2 Protein 8e-66 100
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 2e-65 99
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 2e-65 99
sseD AAC28882.1 SseD Virulence SPI-2 Protein 1e-64 99
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 2e-63 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sseD YP_005181245.1 putative pathogenicity island effector protein VFG0502 Protein 3e-66 100