|
Name : hcsA' (HIB_11650) Accession : YP_005179191.1 Strain : Haemophilus influenzae 10810 Genome accession: NC_016809 Putative virulence/resistance : Virulence Product : capsule biosynthesis protein HcsA Function : - COG functional category : - COG ID : - EC number : - Position : 1192188 - 1194230 bp Length : 2043 bp Strand : - Note : - DNA sequence : ATGCCAACTGCACTGATTTTCTCGCACGGAATCAAAAAAATTCCGCATTTAGCCTCATTTTTTCCTAATGAAGAATTGGC TTTCGCACGCATTTTTTCTGTGTCGAAGGCTGATTCTGTATTGGGTTGGGGGTTACGTCCTTCCACGAAAAAATCACGTG CATATGCACAAAAGTATAACTTACCGTTTATCGCCTTAGAAGACGGTTTTTTACGTTCTCTTGGTCTGGGGGTTGATGGT TATCCGCCGCTTTCTATGGTTGTGGATAAATTAGGTATTTATTACGACACGACTCGTCCCTCAACATTGGAACAGCTTAT TCAGGCAGGTGAATGTGATGAGGTTTTAGCGGAAAAAGCTCGGTCACAAATTGTGACGCATCAGCTTTCAAAATATAACC AAACATTGGTGGATTATGAGAAAGAAGGTGACGAACCGTTAGTACTTGTCATTGACCAAACTTTTGGTGATATGGCAGTG AAATATGGTCAAGCCGATGCCGAGCATTTTGCGCAAATGTTGCAAGCTGCCATTTCAGAAAATCCAAACGCTAAAATTTT AGTGAAAACCCATCCTGATGTATTAAGTGGTAAAAAACAGGGCTATTTTTCGCCAAATGAAAATTATCCAAGCAACGTGC ATTTTTTTAGTAACCCCGTCAATCCGATTTCACTAATTAAAGCCGTAGAGAAAGTTTATTGTGTTACCTCTCAAATGGGG TTTGAAGCATTATTAATGGGTAAACCGGTGGTGACTTTTGGCGTACCATGGTTTGCTGGCTGGGGTGTGACGGATGATCG TCATCCGAATGCTAAAGCGCTAACGCAAAGTGAGCGCCGTAAAGTGCGGTCAGTTTTACAACTGTTTTATGCAGCATACT TTCAATATACCCGTTATTTGAATCCGAATACCGGCAAATCGGGAACGATTTTTGATGTCATTAACCACATCATTCACACC AAAGCACTTAACTTGCGATTACAAGGCAATCTCTATTGCGTTGGAATATCCTTGTGGAAACGTGCGGTTATTAAACCGTT TTTCCGTTTACCAAGCTGCAAGCTACATTTTGTTACAGATGTGAGTAAACTCAATGGTAAAACATTCACAAAAAATGACC GCTTGTTACTATGGGGAACGGGTAAAGAAGCCGCGCTAAATTATGCTAAAGCGCATAATATTAACGTGCTCAGAATGGAA GATGGGTTTATTCGTTCAGTTGGGCTTGGCTCAAACTTGGTTGCGCCACTTTCTTTGGTGTGTGACGATTTAGGTATCTA TTTCAATGCAGAAAGCCCTTCTCGCTTAGAAGAGATTTTGCAGCATCAACAATTTACCGAAGCAGATTTAATCGAAGCCA AGCAGCTACAACATGCGTTAGTATCGCAACATATCGGTAAATATAATGTCGGCGAAGGTACATTTTCTCTGCCTAATACA GACAAAAAGAAAATTTTAGTGGTCGGGCAGGTCGAAGACGATGCCTCTATTCGAACCGGCTCACCGAATATTCGTACTAA TCTAGATTTATTAAAAACAGTGCGCGCAGCAAACCCAGAAGCTTATATCGTTTATAAGCCACACTCGGATGTTGTGAGTG GTAACCGCATTGGTCATATTGCAGAATCGCAAGCGGTCAAATTAGCGGATCAAATTGCAAAAACAGAAAACGTGCTTGAC TGCATCAATGCCGTGGATGAACTACACACCATGACATCTCTTGCAGGTTTTGAAGCCTTGCTAAGAAACAAAACGGTGCA TTGTTATGGTTTGCCATTTTATAGCCACTGGGGATTGACCGTTGATCACTGCTCTTTTAACCGCCGCAATCGAAAACTTT CATTGTTAGAACTTATTGCTGGCACATTGGTCTATTATCCACAATATGTTAATCCGAATACGGGTGAGCTAACCAATGCT CAAACAACGATTGAAATTTTAAAAGCACAGCGTTTAGCGCTTAATCACAGTGGCATTCATCGCCATTGGTTGGCAAAACA ATATGGCAAATTACAGCATTTAGTGCGCACATTGCGTACTTAA Protein sequence : MPTALIFSHGIKKIPHLASFFPNEELAFARIFSVSKADSVLGWGLRPSTKKSRAYAQKYNLPFIALEDGFLRSLGLGVDG YPPLSMVVDKLGIYYDTTRPSTLEQLIQAGECDEVLAEKARSQIVTHQLSKYNQTLVDYEKEGDEPLVLVIDQTFGDMAV KYGQADAEHFAQMLQAAISENPNAKILVKTHPDVLSGKKQGYFSPNENYPSNVHFFSNPVNPISLIKAVEKVYCVTSQMG FEALLMGKPVVTFGVPWFAGWGVTDDRHPNAKALTQSERRKVRSVLQLFYAAYFQYTRYLNPNTGKSGTIFDVINHIIHT KALNLRLQGNLYCVGISLWKRAVIKPFFRLPSCKLHFVTDVSKLNGKTFTKNDRLLLWGTGKEAALNYAKAHNINVLRME DGFIRSVGLGSNLVAPLSLVCDDLGIYFNAESPSRLEEILQHQQFTEADLIEAKQLQHALVSQHIGKYNVGEGTFSLPNT DKKKILVVGQVEDDASIRTGSPNIRTNLDLLKTVRAANPEAYIVYKPHSDVVSGNRIGHIAESQAVKLADQIAKTENVLD CINAVDELHTMTSLAGFEALLRNKTVHCYGLPFYSHWGLTVDHCSFNRRNRKLSLLELIAGTLVYYPQYVNPNTGELTNA QTTIEILKAQRLALNHSGIHRHWLAKQYGKLQHLVRTLRT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 0.0 | 58 |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 3e-132 | 48 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 2e-132 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hcsA' | YP_005179191.1 | capsule biosynthesis protein HcsA | VFG0704 | Protein | 0.0 | 97 |
| hcsA' | YP_005179191.1 | capsule biosynthesis protein HcsA | VFG0692 | Protein | 0.0 | 97 |
| hcsA' | YP_005179191.1 | capsule biosynthesis protein HcsA | VFG0259 | Protein | 0.0 | 58 |
