Gene Information

Name : DND132_3334 (DND132_3334)
Accession : YP_005169340.1
Strain : Desulfovibrio desulfuricans ND132
Genome accession: NC_016803
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3725225 - 3727822 bp
Length : 2598 bp
Strand : +
Note : TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: dvm:DvMF_0567 ATP-dependent chaperone ClpB; SMART: AAA ATPase

DNA sequence :
ATGGATATCAACACATTCACCCGCAAGACCCAGGAAGCCGTTTCCGAGGCCCAGAATCTGGCCATTCGGAGCGGCCATCA
ACAGATAGACTGCGAACACCTGATGCACGCCCTGGTGGCCCAGGAAAACGGCCTGGCAGGCCAGATCCTGCGCAAGCTCG
GCGTGGCCCCGGACGCCTATCTCGGGGCCATCGACGCCGAGATCGCAAAAATGCCCAGCGTGTCCGGCTCGGGCGCGCGC
CCGGACCAGGTCATGGTCACCCAGCGCATGCAGCAGGCCCTGGTCGCCGCCGACGACATGCGCAAGCGCATGAAGGACGA
ATACGTCTCCGTGGAGCACGTCTTTGTGGCCCTCATGGACGAGCCCGGCAATTCCGGCGTGGGCCGCGTCAACAAACAGT
TCGGCCTGGACAAGAACAAGGTCCTGGCCGCCCTTGAGGAAGTGCGCGGCAAGCAGCGCGTGACCTCGGACAACCCCGAG
GCCACCTACGAATCCCTGAAGAAGTACGGACGCGACCTGGTGGAGGAGGCCCGCTCGGGCAAGCTCGACCCGGTCATCGG
CCGCGACTCCGAAATTCGCCGCGTCATCCGCATCCTGTCCCGCCGCACCAAGAACAACCCGGTGCTCATCGGCGAGGCGG
GCGTGGGCAAGACCGCCATCGCCGAGGGGCTGGCCCAGCGCATCGTCAAGGGCGACGTGCCCGAGGGCCTGAAGGACAAG
ACCGTCTTCTCCCTCGACATGTCCGCCCTCGTGGCCGGGGCCAAGTACCGCGGCGAGTTCGAGGAGCGGCTCAAGGCCGT
GCTCAAGGAGGTGGCCGAGTCCGAGGGACGGATCATCATGTTCATCGACGAGCTGCACACCATCGTGGGCGCGGGCAAGA
CCGACGGGGCCATGGATGCGAGCAACATCCTGAAGCCCATGCTGGCGCGCGGCGAGCTGCACTGCATCGGCGCGACCACG
CTGGACGAGTACCGCAAGTACATCGAGAAGGACCCGGCCCTGGAGCGCCGCTTCCAGACCGTGCTGGTGGAGGAGCCGTC
CGTGGAGGACACCATCTCCATCCTGCGCGGCCTGCGCGAGCGGTTCGAGGTGCACCACGGCGTGCGCATCGCGGACGGGG
CCATCGTCGAGGCGGCCGTGCTGTCCAGCCGGTACATCACCGACCGGCAGCTGCCGGACAAGGCCATCGACCTCATCGAC
GAGGCCGCGGCCCTGATCCGCACCGAGATCGACTCCCAGCCCTATGAGCTGGACACGGCCAACCGCCAGATCATGCAGTA
CGAGATCGAGCGCGAGGCCCTGAAGCGGGAAACCGACAAGGCGTCCCGCGAACGGCTCGTCGAGCTGGAGAAGAAGCTGG
CCGAACTCAAGGAATCCCAGTCCGCCATGCTGGCCCAGTGGGAGAACGAGAAGTCCGGCATCGAGCGGCTGCGAGCCCTG
AAGAGCGAGATCGAGGCCACCCGCCGCGAGATCGACGAGGCCAAGCGCATTCCCGACTACAACCGGGCCGCCGAGCTGGA
ATACGGCAAGCTGCCCCAGTTGGAGAAGGAGCTGGCCCAGCGCAACGAGGCCCTGGAGACCGGCGACGGACCGCGCATGG
TCCGCGAGGAGGTCGGCCCGGACGACATCGCCCAGGTCATCGCCAAGTGGACCGGCATCCCCGTGTCCCGGCTCATGGAA
GGGGAGCGCGAGAAGCTGCTCCGGCTGGCCGACGTCCTGCATGAGCGGGTCATCGGCCAGGACCAGGCCGTCCAGGCCGT
GGCCGACGCGGTGCTGCGCGCCCGGGCCGGGCTCAAGGACCCGACCCGGCCCATCGGCTCGTTCATCTTCCTCGGCCCCA
CGGGCGTGGGCAAGACCGAGCTGTGCAAGACCCTGGCCTCGGCCCTGTTCGACACCGAGGACAACATGGTCCGCATCGAC
ATGTCCGAGTACATGGAGAAGCACACCGTGGCGCGGCTCATCGGCGCGCCTCCGGGCTACGTGGGCTACGACGAGGGCGG
CCAGCTGACCGAGGCCGTGCGGCGCAAGCCGTACTCGGTCATCCTGTTCGACGAGATCGAGAAGGCGCACCACGACGTGT
TCAATGTGCTCCTGCAGATTCTGGACGACGGGCGGCTGACCGACTCCCACGGGCGCACGGTGGACTTCAAGAACACCATC
GTGATCATGACCTCCAACCTGGGCGCGGAATACATGCTCGACGGCATCGACGCGAACGGGGAGTTCAAGCCGGGCGTGGA
GGACCAGGTGCGCGAGGTGCTGCGGCGCCACTTCCGGCCCGAGTTCCTGAACCGCGTGGACGAGACCGTGCTCTTCCGGC
CGCTGACCCGGGAACAGCTCATCGGCATCATCGACCTGCTGGTGGGCGGGCTGCGCAAGCGGCTTGAGGACCGCAACATC
GACCTGGTCCTGACGGACCGGGCCAAGGCGTTCATCGCCGAGTCGGCCTACGACCCGTCCTTCGGCGCGCGGCCCCTGCA
CCGCTACCTCCAGCATCACCTGGAGACGCCGCTGGCCAAGCGCCTCATCGGCGGCGACCTGACCGACGGCCAGACCGTCA
CCGTGGACGAACGCGGCGAGGAGCTGGTCTTCGAATAG

Protein sequence :
MDINTFTRKTQEAVSEAQNLAIRSGHQQIDCEHLMHALVAQENGLAGQILRKLGVAPDAYLGAIDAEIAKMPSVSGSGAR
PDQVMVTQRMQQALVAADDMRKRMKDEYVSVEHVFVALMDEPGNSGVGRVNKQFGLDKNKVLAALEEVRGKQRVTSDNPE
ATYESLKKYGRDLVEEARSGKLDPVIGRDSEIRRVIRILSRRTKNNPVLIGEAGVGKTAIAEGLAQRIVKGDVPEGLKDK
TVFSLDMSALVAGAKYRGEFEERLKAVLKEVAESEGRIIMFIDELHTIVGAGKTDGAMDASNILKPMLARGELHCIGATT
LDEYRKYIEKDPALERRFQTVLVEEPSVEDTISILRGLRERFEVHHGVRIADGAIVEAAVLSSRYITDRQLPDKAIDLID
EAAALIRTEIDSQPYELDTANRQIMQYEIEREALKRETDKASRERLVELEKKLAELKESQSAMLAQWENEKSGIERLRAL
KSEIEATRREIDEAKRIPDYNRAAELEYGKLPQLEKELAQRNEALETGDGPRMVREEVGPDDIAQVIAKWTGIPVSRLME
GEREKLLRLADVLHERVIGQDQAVQAVADAVLRARAGLKDPTRPIGSFIFLGPTGVGKTELCKTLASALFDTEDNMVRID
MSEYMEKHTVARLIGAPPGYVGYDEGGQLTEAVRRKPYSVILFDEIEKAHHDVFNVLLQILDDGRLTDSHGRTVDFKNTI
VIMTSNLGAEYMLDGIDANGEFKPGVEDQVREVLRRHFRPEFLNRVDETVLFRPLTREQLIGIIDLLVGGLRKRLEDRNI
DLVLTDRAKAFIAESAYDPSFGARPLHRYLQHHLETPLAKRLIGGDLTDGQTVTVDERGEELVFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 2e-93 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DND132_3334 YP_005169340.1 ATP-dependent chaperone ClpB VFG2076 Protein 3e-106 43
DND132_3334 YP_005169340.1 ATP-dependent chaperone ClpB VFG2084 Protein 6e-99 41