Gene Information

Name : Clo1100_3983 (Clo1100_3983)
Accession : YP_005149896.1
Strain : Clostridium sp. BNL1100
Genome accession: NC_016791
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4454555 - 4455034 bp
Length : 480 bp
Strand : -
Note : PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH

DNA sequence :
ATGAAAATTACAATAGCAGCTGTAGGAAAGCTGAAAGAAAAGTATTTGAAAGAAGCAATATCAGAGTATTCCAAAAGATT
ATCCCGCTTCACGGAAGTCGAAATTATAGAAGTAGATGATGAATACGCACCCGACTCCCTCAGTGAGGCACAGGAAAGTC
AAGTCAAGAAAAAGGAAGCGGAGAAGATACTAAAGAGAGTAAAACAGGGAAGCTATGTTATATTATTGGACTTGGCGGGA
GAACAGATAACTTCTTCGGGATTTTCCGCTAAGGTTGAAAATATAATGCTTTCCGGGAATTCACATATAACATTCATTAT
AGGAGGCTCGCTTGGCTTAGATCAAAGTCTTATAAATATTGCTGATTACAGGCTTTGTCTTTCAAAAATGACCTATCCGC
ACCAACTGGCCAGAGTTATACTTATGGAGCAAGTGTACAGGGCTTTTAAGATAATTAAGAATGAGACATATCACAAATGA

Protein sequence :
MKITIAAVGKLKEKYLKEAISEYSKRLSRFTEVEIIEVDDEYAPDSLSEAQESQVKKKEAEKILKRVKQGSYVILLDLAG
EQITSSGFSAKVENIMLSGNSHITFIIGGSLGLDQSLINIADYRLCLSKMTYPHQLARVILMEQVYRAFKIIKNETYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 8e-42 56
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 2e-40 52
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 2e-40 52
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 2e-40 52
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 2e-40 52
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 2e-40 52
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 2e-40 52
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 2e-40 52
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 2e-40 52
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-40 52
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 2e-40 52
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-40 52
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 2e-40 52
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-40 52
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 5e-37 51
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 1e-39 51
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 3e-40 51
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 3e-40 51
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 3e-25 47