Gene Information

Name : Clo1100_0358 (Clo1100_0358)
Accession : YP_005146449.1
Strain : Clostridium sp. BNL1100
Genome accession: NC_016791
Putative virulence/resistance : Virulence
Product : chaperone ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 402848 - 405280 bp
Length : 2433 bp
Strand : +
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif

DNA sequence :
ATGTATCAACGTTTTACAGAAAAGGCAGAGAGGGCAATAGGATTTTCCCAGCAGGCTGCTGTAGATTTGGGACATAATTA
TGTCGGTACTGAACATATACTCTTGGGACTTGTAAAAGAAGGAACAGGTGTTGCAGCCAGAGTACTTCAGGGTCAAGGGA
TAACCGAGGAGAAAATTCTAAAGGAGATCGAAGAACTTATTGGTAAAGGAGATGCTGAAGGTACACAGCCTGTTGGGTTT
ACTCCCAGAACCAAAAGAGTGCTTGAGCTTGCTTTTAAAGAGGCAAGAAGGATGGGACAGGGATACATTGGAACAGAACA
TCTTCTTCTTGGGATTATGAAAGAGGGAGAAAGTGTTGCAGTCAGAATTATGATGGATTTGGGAGTCGATCCCCAAAAGC
TTCTTAATGAACTTGTGAAAATTCTTACGGAAGAATCCCCCGGTTCCAACGGTTCTGCAAAGAGCAGCAATTCAAACTCA
AATACTCCGACCCTGAACCAGTTTGGTAGGGATTTGACAGATATGGCAAGGGACGGAAAAGTTGACCCTGTTATAGGACG
TGACAAGGAAATAGAGAGAGTTATTCAGATTCTTAGCCGAAGAACCAAAAACAACCCATGTCTCATAGGTGAACCGGGTG
TTGGTAAGACTGCTATTGCAGAAGGTCTGGCTCAAAAAATTGTTGAAGGCAATATTCCTGAGATTTTAAGCGACAAGAGA
GTTGTTACCCTTGATTTGTCCTCAATGGTTGCAGGCGCAAAGTACAGGGGAGAATTTGAAGACAGACTTAAAAAGGCAAT
GGAAGAAATCAGAAAGACTACAAACGTAATATTGTTCATAGATGAGCTGCATACTATTGTAGGTGCCGGAGCAGCCGAAG
GTGCCATAGATGCCTCAAACATACTCAAACCATCTCTTGCAAGAGGTGAAATTCAGGTTATCGGTGCTACAACCTTAAAT
GAGTACAGAAAACACATAGAAAAGGACGCAGCTCTGGAAAGAAGATTTCAGCCTATAACCGTAGGCGAGCCTTCGAAGGA
AGAGGCTGTTGAAATATTAAAGGGTGTTCGTGATAAATACGAGGCGCACCATAGAGTAAAGATAACCGATGATGCTCTTG
AAGCCGCAGTTAAGCTTGGGGACAGATATATAACAGACAGATTCCTGCCGGACAAGGCTATTGACTTGATTGACGAGGCA
GCTTCGAGAATAAGGCTCAAAACCTTTACTGCTCCACCTGATTTAAAGGAAATGGAGGAGAGGGTTGAAAAGCTTAGTAA
AGAAAAAGAAGATGCCATCAGATGTCAGGAATTTGAAAAAGCAGCAAGAATAAGAGATGATGAACAAAAGCTTAAAAATG
AGCTTGATAAAATAAGGGATCAATGGCACCAGAAGAATCAAACAAAAACAGATACTGTTACAGAAGACGAGATAGCTGAT
ATAGTTGCCAGCTGGACAGGAATACCTGTAAAGCGGTTGGCTGAGGAAGAATCCGAGAGACTACTAAAAATGGAGGAAAC
TCTTCATAAGCGAGTAATCGGCCAGGATGAGGCTGTTAAATCCATATCAAAGGCAATCAGAAGAGGGCGTGTTGGACTGA
AAGATCCGAAACGACCGGTTGGCTCATTTATATTTATGGGTCCTACGGGAGTTGGTAAGACTGAACTTTGCAAAGCATTG
GCAGAAGCAATGTTTGGCGATGAAAAGTCAATGATTCGTGTTGATATGTCCGAGTTTATGGAAAAGCACAGTGTATCAAA
ACTGGTTGGTTCACCTCCGGGCTACGTTGGTTATGACGAAGGCGGACAGCTTACTGAAAGGGTCAGAAGAAAGCCGTACT
CAGTACTTCTGTTTGATGAAATAGAAAAGGCACATCCTGATATTTTCAATATACTGTTGCAGATACTGGAAGACGGCAGA
CTTACTGATTCACAGGGACGTGTGGTAGATTTCAGAAATACCATCATAATCATGACCTCAAATGTGGGGGCAAGAACTAT
TACTGAGCCTAAGAGACTTGGATTTTCAGCTTCAAACGATGAGAGCGCAAAGAATTATGAGGATATGAAGAACAATGTAA
TGGGAGAACTCAAAAAGATGTTCAGGCCGGAGTTCCTTAATAGAATTGACGATATAATTGTTTTCCACCCGTTGAGCAAG
GAAAACATAAAAGAAATTGTACGTCTCATGCTGGATGTTCTTGTAAACAGGCTAAAGGCTAATGAAATAACAATGGAAGT
AAGTGAAGAGGCTATGGACTATCTGGCGCAAAAGGGATTTGACCCTGTGTTTGGAGCAAGACCCTTAAGACGTGCAATAC
AAAGCATGGTTGAGGATAAGCTTGCGGAAGACATGCTGGAAGGCAAGGTAAAGGCCGGAGACAGCATCAGAATAGACTTT
GACGGAGAAAACATTGTTGTTAATAAAAAGTAA

Protein sequence :
MYQRFTEKAERAIGFSQQAAVDLGHNYVGTEHILLGLVKEGTGVAARVLQGQGITEEKILKEIEELIGKGDAEGTQPVGF
TPRTKRVLELAFKEARRMGQGYIGTEHLLLGIMKEGESVAVRIMMDLGVDPQKLLNELVKILTEESPGSNGSAKSSNSNS
NTPTLNQFGRDLTDMARDGKVDPVIGRDKEIERVIQILSRRTKNNPCLIGEPGVGKTAIAEGLAQKIVEGNIPEILSDKR
VVTLDLSSMVAGAKYRGEFEDRLKKAMEEIRKTTNVILFIDELHTIVGAGAAEGAIDASNILKPSLARGEIQVIGATTLN
EYRKHIEKDAALERRFQPITVGEPSKEEAVEILKGVRDKYEAHHRVKITDDALEAAVKLGDRYITDRFLPDKAIDLIDEA
ASRIRLKTFTAPPDLKEMEERVEKLSKEKEDAIRCQEFEKAARIRDDEQKLKNELDKIRDQWHQKNQTKTDTVTEDEIAD
IVASWTGIPVKRLAEEESERLLKMEETLHKRVIGQDEAVKSISKAIRRGRVGLKDPKRPVGSFIFMGPTGVGKTELCKAL
AEAMFGDEKSMIRVDMSEFMEKHSVSKLVGSPPGYVGYDEGGQLTERVRRKPYSVLLFDEIEKAHPDIFNILLQILEDGR
LTDSQGRVVDFRNTIIIMTSNVGARTITEPKRLGFSASNDESAKNYEDMKNNVMGELKKMFRPEFLNRIDDIIVFHPLSK
ENIKEIVRLMLDVLVNRLKANEITMEVSEEAMDYLAQKGFDPVFGARPLRRAIQSMVEDKLAEDMLEGKVKAGDSIRIDF
DGENIVVNKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 56
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 6e-103 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clo1100_0358 YP_005146449.1 chaperone ATPase VFG0079 Protein 0.0 60
Clo1100_0358 YP_005146449.1 chaperone ATPase VFG0080 Protein 8e-165 54