Gene Information

Name : Clo1100_3560 (Clo1100_3560)
Accession : YP_005149490.1
Strain : Clostridium sp. BNL1100
Genome accession: NC_016791
Putative virulence/resistance : Unknown
Product : site-specific recombinase, DNA invertase Pin
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4036088 - 4037650 bp
Length : 1563 bp
Strand : -
Note : PFAM: Recombinase; Resolvase, N terminal domain

DNA sequence :
ATGGCAGAGAAAAATATAACTGTAATTCCAGCACGAAAAAGAGTTGGAAGTACAGCCGCAAAAGAGATAATAAAGAAACT
GCGTGTTGCTGCCTATTGCCGTGTTTCTACAGAAACTGAAGAACAGAATTCAAGCTATGAGGTGCAGGTTGCACATTATA
CAGAGTTTATTAAGAAAAATACTGAATGGGAGTTTGCAGGCATATTTGCAGATGACGGCATATCTGGCACTAACACAAAA
AAACGTGAAGAGTTCAACCGTATGATAGATGAGTGCATGGAGGGTAAAATAGATTTAGTTATTTCCAAGTCCATTAGTCG
ATTTGCTCGTAATACTCTGGATTGCCTAAAGTACATTAGACAACTCAAGGAGAAGAACATATCGGTATTTTTCGAGAAGG
AGAACATCAATACAATGGATGCCAAGGGTGAAGTATTGCTTACCATTATGGCATCTCTAGCACAGCAAGAAAGTCAGAGC
CTTTCGCAGAACGTTAAACTGGGACTTCAATACAGATATCAACAAGGAAAGGTACAGGTCAACCACAAGCGTTTCATGGG
GTACACAAAAGACGAAGACGGCAATTTAATAATAGTTCCTGGAGAGGCAAAAATCATTAAACGAATTTATAGAGAATACC
TTGAGGGCAAAAGCCTGGCGGGTATTGGTAGGGATCTTGAAAAGGATGGTATTTTAACAGCTGCCGGAAAACCAAAGTGG
AGACCAGAAACCTTAAAGAAAATCCTTACGAATGAGAAATACATCGGTGATGCACTTTTGCAAAAGACCACTACAGTTGA
TTTTCTTACAAAGAAAAGGGTCAAGAATGAAGGTCATCTCCCGCAGTATTATGTTGAAAATAACCATGATGCTATTATTC
CAAAAGAACTTTTTTTACAAGCACAGGAAGAGCTTCATCGCCGGAATAACATTTACACAGGTGAAGACAAGAACAAAAGG
ATTTACAGCAGTAAATACGCTTTGAGCTCCATAACCTTTTGTGGCGATTGTGGTGATATTTACAGACGAGTTTACTGGAA
CATTCACGGTAGAAAAGAAATTGTTTGGCGATGCGTAACAAGAATCGAGCAAGGCCCCGAAGTTTGTAAGAGCCGAACAG
TAAAGGAAGGCGATTTATATGATGCTGTTATGACCGCCATTAATAGATTACTTGCTGGCGGTGACAACATGATAAAAACA
CTGGAAGAAAACATTCATGCAGTAATCGGTGACGCTACAGAGTATCAAATTTCAGAGATTAACACCTTGCTTGAAGAAAA
GCAGAAAGAGTTAATTAGCCTTGCGAATAAAGGGAAAGACTATGAACCTCTTGCAGATGAGATTGATAACTTGCGTGAAA
AACGGCAGAACCTTCTTGTGGAGGATGCATCCTTAAGTGGAGAGAATGAGAGGATCAACGAGCTGATAGAATTTATCCGC
AACAATAAATACCGTACCCAAAGATATGATGATGCACTTGTAAGAAAGTTAATACAGAATGTTACTGTTTACAATGACCA
CTTTGTAATATGCTTTAAATCTGGCATTGAAGTTGAAGTATGA

Protein sequence :
MAEKNITVIPARKRVGSTAAKEIIKKLRVAAYCRVSTETEEQNSSYEVQVAHYTEFIKKNTEWEFAGIFADDGISGTNTK
KREEFNRMIDECMEGKIDLVISKSISRFARNTLDCLKYIRQLKEKNISVFFEKENINTMDAKGEVLLTIMASLAQQESQS
LSQNVKLGLQYRYQQGKVQVNHKRFMGYTKDEDGNLIIVPGEAKIIKRIYREYLEGKSLAGIGRDLEKDGILTAAGKPKW
RPETLKKILTNEKYIGDALLQKTTTVDFLTKKRVKNEGHLPQYYVENNHDAIIPKELFLQAQEELHRRNNIYTGEDKNKR
IYSSKYALSSITFCGDCGDIYRRVYWNIHGRKEIVWRCVTRIEQGPEVCKSRTVKEGDLYDAVMTAINRLLAGGDNMIKT
LEENIHAVIGDATEYQISEINTLLEEKQKELISLANKGKDYEPLADEIDNLREKRQNLLVEDASLSGENERINELIEFIR
NNKYRTQRYDDALVRKLIQNVTVYNDHFVICFKSGIEVEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSU05_0953 YP_001198319.1 DNA recombinase Not tested 89K Protein 0.0 88
SSU98_0960 YP_001200518.1 DNA recombinase Not tested 89K Protein 0.0 88
smi_1713 YP_003446815.1 site-specific recombinase Not tested The aminoglycoside resistance gene cluster Protein 1e-161 65