Gene Information

Name : Clo1100_3475 (Clo1100_3475)
Accession : YP_005149411.1
Strain : Clostridium sp. BNL1100
Genome accession: NC_016791
Putative virulence/resistance : Unknown
Product : site-specific recombinase, DNA invertase Pin
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3961343 - 3962992 bp
Length : 1650 bp
Strand : -
Note : PFAM: Recombinase; Resolvase, N terminal domain

DNA sequence :
ATGCAGACAGCAACAGCGAAAAAGAAAAACATATCGGTTATACCATCCCAGCCGGAATATGACCGGAGCATAAAGCCTCA
GTTTAAAACCCTGCGGGTAGCGGCATACTGCCGTGTCAGCACGACACTGGAACAGCAGGAAACCAGTTATGAAGCCCAGG
TTTCCTACTACACTGAAAAAATCAAGAGCAACCCCAACTGGAAGCTTGCCGGTATTTATGCCGACGATGGAAAAAGCGCA
ACCAACACCAAAAAGCGTGATGACTTCAACGCCATGATCGAAGACTGCATGGCTGGGAAAATCGATATGGTTATCACCAA
GTCGGTCAGCCGCTTCGCCAGAAACACGGTAGACAGCCTACAGAATATCCGCAAACTCAAGGAAAAGAATATCGCCGTCT
TCTTCGAAAAAGAGGGTGTGAATACACTGGAGGGCACCGGCGAGCTTTTAATCACCATTTTAAGCAGCCAGGCACAGGAA
GAAAGCCGGAACTTAAGTGAGAACACCCGGTGGGGTCTGGTCAGACGCTTTGAAAACGGAATCGTCTCGGTCAACCATAA
TAAGTTTTTAGGCTACACCAAGGACAAGAACGGTGAGCTGGTCATCGTACCGGAGGAAGCAGAACTGGTCAGACGGATTT
TCCGGCTTTACCTCGAAGGGAGCAGCATCGTCCAAATCGGCAAGATTTTAGATGATGAAGGGATCACCACCGTCACCGGA
TTAACCCAGTGGTGCCCCGGCGTCATTGATAAAATGCTGAGCAACGAGAAATACATGGGAGATGTCCTTCAGCAGAAAAC
TTATACGGTTGATTTCCTCTCCAAAAAGCGCGTTAAGAATAACGGCATCGTCCCCCAATATTATATCCAGGATGACCATG
AAGCCATTGTCCCGAAAGAGCTTTACTACCGGGTACAGGAGGAAAAAACCAGGCGGGCAAGCCTGAGCAAATCCGCAGTC
GCCAGAAAAGCAAAAAAGGAGAAAAGCAAATACAGCTCCAAATATGCCCTGACAGACATCATGGTATGCAAGGAATGCGG
ACAGCCTTACCGCAGACAGATCTGGTCGAAATACGGTCAGAAAAGCGCCGTGTGGCGGTGTGAGAATCGCCTGAAGAACG
GCACCAAGAACTGCAGAAACTCCCCGACCTTAAAAGAGGAAGTCCTGCAGGAAGCAGTTATGACTGCCATAAACAGTGTC
GTGGAAAACCGCGGCGAGTTTGTCGGCGCCTTCCGTGAAAACGTCATCCAGGTCATCGGCAGCTACTCCACCAAAAATGT
ACCGACCGAATATGACGGGCAGATCGAAAAGCTTCAGGGTGAGATGCTGGCCCTGATCGAGGAAAACGCAAAGAAGGGTT
CCCTCACAGAAGATTTTGACGAACAGTACCAGAGGATCGCAGAGCAGATCAAGAATTTAAAGCAGAAGAAGCTGGATCTG
GTGCGGGAACGGAAACAGGCGGAAAGCTTTCAACAAAGGGTCACCGACATGGATGTCTGCCTGAAGAAAACCACCTGCGA
GATACGAGAATTTGACAACGACTTAGTCCGAAGGCTTCTGCAGAACATCAGGGTAATCAACGAGGAACTGATCGAAATCC
AATTCAAATCCGGAATCGTGATGAAACAGCGGGTTTCCTATTATGACTAA

Protein sequence :
MQTATAKKKNISVIPSQPEYDRSIKPQFKTLRVAAYCRVSTTLEQQETSYEAQVSYYTEKIKSNPNWKLAGIYADDGKSA
TNTKKRDDFNAMIEDCMAGKIDMVITKSVSRFARNTVDSLQNIRKLKEKNIAVFFEKEGVNTLEGTGELLITILSSQAQE
ESRNLSENTRWGLVRRFENGIVSVNHNKFLGYTKDKNGELVIVPEEAELVRRIFRLYLEGSSIVQIGKILDDEGITTVTG
LTQWCPGVIDKMLSNEKYMGDVLQQKTYTVDFLSKKRVKNNGIVPQYYIQDDHEAIVPKELYYRVQEEKTRRASLSKSAV
ARKAKKEKSKYSSKYALTDIMVCKECGQPYRRQIWSKYGQKSAVWRCENRLKNGTKNCRNSPTLKEEVLQEAVMTAINSV
VENRGEFVGAFRENVIQVIGSYSTKNVPTEYDGQIEKLQGEMLALIEENAKKGSLTEDFDEQYQRIAEQIKNLKQKKLDL
VRERKQAESFQQRVTDMDVCLKKTTCEIREFDNDLVRRLLQNIRVINEELIEIQFKSGIVMKQRVSYYD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSU98_0960 YP_001200518.1 DNA recombinase Not tested 89K Protein 3e-109 49
SSU05_0953 YP_001198319.1 DNA recombinase Not tested 89K Protein 3e-109 49
smi_1713 YP_003446815.1 site-specific recombinase Not tested The aminoglycoside resistance gene cluster Protein 2e-116 48