Gene Information

Name : Clo1100_2900 (Clo1100_2900)
Accession : YP_005148857.1
Strain : Clostridium sp. BNL1100
Genome accession: NC_016791
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3326422 - 3327123 bp
Length : 702 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGGTGGAGCAAATAAAAATACTCATTGTTGAGGATGACAGGGAAATCAACATGCTTATAGCTGACAATCTGATTAAGGA
AGGATATTGCGTAATAAGCACATATGATGGTGCAGCCGCTACAGAAAAGTTTACGGCTGATAAATTCCAGCTGGTTATTC
TGGATATAATGCTTCCTAAGGTAGGGGGCTACGAAGTTTTACAAAAAATAAGGGAGAAAGGAAATACTCCCGTGCTCATA
TTATCTGCGAAATGTCAGGAAACAGATAAAATAATTGGTTTGGGGCTTGGTGCTGATGATTATTTGGCCAAGCCCTTTGG
CATTGGTGAATTAACAGCAAGGGTAAAAGCACAGCTGAGAAGATATTTGAAATTTTCATGTGAAACCGACAGGCAAACAC
AAATAGTCAGCCATATGGACATTGAAATGAATATAGGTACGTATGAAGTGAAAGTAGGGGGCAACTCCGTTACATTGACA
GCCAAGGAGTTTGAAATACTGAAACTCTTCTTACAGAATCCCAGAAAGGTATTTACCAAAAACCAGCTTTTTAAATCAAT
ATGGGGTGGAAACTATATAAACGATGAGAACACTGTCATGGTTCATATAAGAAGGTTGCGTGAAAAAATTGAAAAAAACC
CTTCAAATCCAAAATATATACAGACTATCTGGGGAATAGGCTACAAGCTTGTAGAGGAGTAA

Protein sequence : 
MVEQIKILIVEDDREINMLIADNLIKEGYCVISTYDGAAATEKFTADKFQLVILDIMLPKVGGYEVLQKIREKGNTPVLI
LSAKCQETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLKFSCETDRQTQIVSHMDIEMNIGTYEVKVGGNSVTLT
AKEFEILKLFLQNPRKVFTKNQLFKSIWGGNYINDENTVMVHIRRLREKIEKNPSNPKYIQTIWGIGYKLVEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 5e-34 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF155139.2.orf0.gene Protein 3e-48 46
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 5e-43 46
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AM180355.1.gene1830. Protein 1e-45 45
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_014475.1.orf0.gen Protein 1e-44 45
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_005054.2598277.p0 Protein 1e-44 45
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain DQ212986.1.gene4.p01 Protein 2e-44 44
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain FJ349556.1.orf0.gene Protein 4e-44 44
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 3e-41 43
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001581.1.gene280.p Protein 6e-46 42
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF130997.1.orf0.gene Protein 4e-40 42
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF162694.1.orf4.gene Protein 1e-44 42
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 2e-34 42
Clo1100_2900 YP_005148857.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 2e-34 41