Gene Information

Name : irp1B (CDHC01_2031)
Accession : YP_005136820.1
Strain : Corynebacterium diphtheriae HC01
Genome accession: NC_016786
Putative virulence/resistance : Virulence
Product : Fe3+-siderophore ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2154471 - 2155502 bp
Length : 1032 bp
Strand : -
Note : -

DNA sequence :
GTGACAACCAGCGTCCATACAACGCCGAACAAGCCGAAGCCCACCAGCGCCAAGTCAACTGTATTTGTTGTACTTTTGGC
ACTTGTGCTGGTGGCAGTGGTGTTGTCGGTCATGTTCGGCGTTCGCAGCATTACACCGGCCGAAGCTCTATCGGCGCTCG
GTGGTGCTACCGACACCGTCGGTGAAGCTGCAGCGTGGACTCGTATTCCACGCACGCTACTGGCGCTCTGCGCGGGTGCG
GCACTCGCTACCTCAGGCACCGCTTTTCAGGCTGTGACACGAAATCCACTGGCAGACCCTGGAATCTTCGGTGTTCTTGC
GGGCGCGTCTCTCGCAGTGGTCATCAGCCTTACGTTCTTTAACGTCAGTCGCACGCTTCCGACCATGCTTATTGCGTCGG
CGGGCGCTTTCGCTGCTGCGGTGTTTGTCTACAGTGTGGGCTCGATTGGTCGCGGCGGCGCCACACCGCTCAAGCTCGCG
CTTTCCGGTGCTGCCACGGCTGCCGCTTTGTCCAGCTTGACCAGCGCCATCCTGTTGCCCCGCGCCAATGTCATGGACGA
GTTCCGCAATTGGCAGATTGGTTCCGTCAGCGGTGCGCAGTGGGAATCGCTCGCGGTGGCGCTGCCGCTGCTTGGGCTCG
GCTTCGCCATAGTGTTTCTCACCAGCAGTGGCCTTAACGCCCTGTCCCTCGGCGATGATGTCGCCACCAGCTTGGGCATT
AACCTCACTCGCACGCGGATCTTGGTCACGCTCGGCGCAGTCTTGCTTTGCGGAACCGCCACGGCCGTCACCGGCCCGAT
TGCCTTCGTCGGGCTAATCGTTCCGCACGTCCTGCGCCTACTGCTCGGCACGGACCACCGCATCCTAATCCCAGCAAGTG
CGCTGGCAGGCGCCGTATTGCTGACACTCGCAGACATCGCAGGACGCCTTCTTGGAGGCTCCTCCGAGATCGCCGTCGGC
ATTATCATGCCGTTCCTCGGCGCGCCACTGTTCATCTGGATTGTGCGACAGACAAGGATGCGCGAACTATGA

Protein sequence :
MTTSVHTTPNKPKPTSAKSTVFVVLLALVLVAVVLSVMFGVRSITPAEALSALGGATDTVGEAAAWTRIPRTLLALCAGA
ALATSGTAFQAVTRNPLADPGIFGVLAGASLAVVISLTFFNVSRTLPTMLIASAGAFAAAVFVYSVGSIGRGGATPLKLA
LSGAATAAALSSLTSAILLPRANVMDEFRNWQIGSVSGAQWESLAVALPLLGLGFAIVFLTSSGLNALSLGDDVATSLGI
NLTRTRILVTLGAVLLCGTATAVTGPIAFVGLIVPHVLRLLLGTDHRILIPASALAGAVLLTLADIAGRLLGGSSEIAVG
IIMPFLGAPLFIWIVRQTRMREL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 2e-37 46
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 2e-37 46
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 8e-16 41
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 8e-16 41
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 8e-16 41
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 8e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irp1B YP_005136820.1 Fe3+-siderophore ABC transporter permease VFG0926 Protein 3e-24 43